Variant report

Variant	rs73469470
Chromosome Location	chr9:85650474-85650475
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:85648525..85651989-chr9:85652042..85656919,4	MCF-7	breast:
2	chr9:85649085..85650615-chr9:85677008..85679300,2	MCF-7	breast:
3	chr9:85648744..85650697-chr9:85651239..85653092,2	K562	blood:

Variant related genes	Relation type
ENSG00000165105	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs17085980	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56732286	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57166033	1.00[AMR][1000 genomes]
rs57296213	1.00[AMR][1000 genomes]
rs58577670	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60115968	0.89[AFR][1000 genomes]
rs7030604	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7043943	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467555	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467563	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467565	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467574	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467581	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467583	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469445	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471438	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471447	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471451	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471455	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471457	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471458	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471460	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471461	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471464	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471466	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471468	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471469	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471471	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471473	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471474	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471479	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471485	1.00[AMR][1000 genomes]
rs73471486	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471487	0.86[AFR][1000 genomes]
rs7470760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85640400-85656400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr9:85644200-85654800	Weak transcription	Fetal Intestine Small	intestine
3	chr9:85644800-85670600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr9:85645600-85662800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr9:85647400-85654200	Weak transcription	Gastric	stomach
6	chr9:85647400-85656400	Weak transcription	Stomach Mucosa	stomach
7	chr9:85649600-85652000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:85649800-85651200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:85649800-85654200	Weak transcription	Pancreas	Pancrea
10	chr9:85650200-85654200	Weak transcription	A549	lung
11	chr9:85650200-85656600	Weak transcription	HMEC	breast

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