Variant report

Variant	rs73469501
Chromosome Location	chr9:85657115-85657116
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:85655587..85657956-chr9:85677154..85679732,3	MCF-7	breast:
2	chr9:85656434..85657253-chr9:85677446..85678161,3	MCF-7	breast:
3	chr9:85653743..85659458-chr9:85673867..85682524,10	MCF-7	breast:
4	chr9:85655420..85657921-chr9:85674583..85677127,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165105	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs17085980	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56732286	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57166033	1.00[AMR][1000 genomes]
rs57296213	1.00[AMR][1000 genomes]
rs58577670	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60115968	0.89[AFR][1000 genomes]
rs7030604	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7043943	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467555	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467563	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467565	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467574	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467581	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467583	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469445	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471438	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471447	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471451	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471455	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471457	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471458	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471460	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471461	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471464	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471466	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471468	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471469	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471471	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471473	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471474	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471479	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471485	1.00[AMR][1000 genomes]
rs73471486	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471487	0.86[AFR][1000 genomes]
rs7470760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85644800-85670600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr9:85645600-85662800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr9:85655200-85671400	Weak transcription	Fetal Intestine Small	intestine
4	chr9:85656400-85657200	Enhancers	Stomach Mucosa	stomach
5	chr9:85656400-85657400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:85656400-85657400	Enhancers	NH-A	brain
7	chr9:85656400-85657400	Enhancers	Osteobl	bone
8	chr9:85656400-85659400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr9:85656600-85657200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr9:85656600-85657200	Enhancers	Hela-S3	cervix
11	chr9:85656600-85657200	Enhancers	HMEC	breast
12	chr9:85656800-85657600	Enhancers	A549	lung
13	chr9:85656800-85662800	Weak transcription	Pancreas	Pancrea
14	chr9:85657000-85657200	Enhancers	NHLF	lung
15	chr9:85657000-85657400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr9:85657000-85657800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr9:85657000-85657800	Weak transcription	NHDF-Ad	bronchial
18	chr9:85657000-85662400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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