Variant report

Variant	rs73471451
Chromosome Location	chr9:85683253-85683254
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85681699..85685875-chr9:85690492..85692266,3	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs17085980	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56732286	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57166033	1.00[AMR][1000 genomes]
rs57296213	1.00[AMR][1000 genomes]
rs58577670	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7030604	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7043943	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467555	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467563	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467565	1.00[AMR][1000 genomes]
rs73467574	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467581	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467583	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469445	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469470	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73469501	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471411	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471425	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471438	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471447	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471455	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471457	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471458	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471460	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471461	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471464	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471466	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471468	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471469	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471471	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471473	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471474	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471479	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471485	1.00[AMR][1000 genomes]
rs73471486	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471487	0.85[AFR][1000 genomes]
rs7470760	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1043722	chr9:85663674-85747562	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv831642	chr9:85679425-85817338	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv831643	chr9:85679431-85798990	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85679200-85687800	Weak transcription	Fetal Intestine Small	intestine
2	chr9:85679400-85684200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr9:85679800-85686600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr9:85681000-85685000	Strong transcription	Cortex derived primary cultured neurospheres	brain
5	chr9:85681200-85683400	Weak transcription	Stomach Mucosa	stomach
6	chr9:85682200-85684400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:85682200-85684800	Weak transcription	HMEC	breast
8	chr9:85682200-85686000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr9:85682400-85683400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:85682400-85684600	Weak transcription	NH-A	brain
11	chr9:85682400-85684600	Weak transcription	NHDF-Ad	bronchial
12	chr9:85682400-85684800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr9:85682400-85685600	Weak transcription	Osteobl	bone
14	chr9:85682400-85706200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr9:85682600-85684800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr9:85683200-85683600	Genic enhancers	Pancreas	Pancrea
17	chr9:85683200-85683600	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
18	chr9:85683200-85684000	Enhancers	Liver	Liver

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