Variant report

Variant	rs17086111
Chromosome Location	chr9:85861761-85861762
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85833661..85835663-chr9:85859284..85862101,2	MCF-7	breast:
2	chr9:85856974..85859342-chr9:85860363..85862242,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000229109	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs7043945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73481829	1.00[AMR][1000 genomes]
rs7855208	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85847200-85865400	Weak transcription	Ovary	ovary
2	chr9:85851400-85862800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:85854400-85862800	Weak transcription	Esophagus	oesophagus
4	chr9:85854400-85863000	Weak transcription	Pancreas	Pancrea
5	chr9:85854400-85865400	Weak transcription	Spleen	Spleen
6	chr9:85854400-85865600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:85854400-85865600	Weak transcription	Right Ventricle	heart
8	chr9:85854600-85864600	Weak transcription	Fetal Kidney	kidney
9	chr9:85854600-85866000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr9:85854600-85866400	Weak transcription	Stomach Mucosa	stomach
11	chr9:85854800-85862600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr9:85854800-85867400	Weak transcription	HepG2	liver
13	chr9:85854800-85890400	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr9:85855000-85865800	Weak transcription	Fetal Stomach	stomach
15	chr9:85855000-85881400	Weak transcription	Adipose Nuclei	Adipose
16	chr9:85856000-85866800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr9:85856200-85910600	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr9:85858600-85865600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr9:85858600-85866400	Weak transcription	Fetal Muscle Leg	muscle
20	chr9:85859000-85862800	Weak transcription	Left Ventricle	heart
21	chr9:85859400-85864200	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr9:85861200-85865800	Weak transcription	Aorta	Aorta
23	chr9:85861400-85873000	Weak transcription	Psoas Muscle	Psoas
24	chr9:85861400-85873000	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr9:85861600-85861800	Enhancers	Fetal Heart	heart
26	chr9:85861600-85868000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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