Variant report

Variant	rs73481829
Chromosome Location	chr9:85910289-85910290
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85908596..85911105-chr9:85914154..85916205,2	MCF-7	breast:
2	chr20:46718060..46720676-chr9:85907908..85910586,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17086111	1.00[AMR][1000 genomes]
rs7043945	1.00[AMR][1000 genomes]
rs7855208	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv6586	chr9:85869828-85914812	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85856200-85910600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr9:85866200-85913000	Weak transcription	Aorta	Aorta
3	chr9:85884200-85912400	Weak transcription	HepG2	liver
4	chr9:85895000-85912800	Weak transcription	Fetal Brain Female	brain
5	chr9:85896000-85913600	Weak transcription	Psoas Muscle	Psoas
6	chr9:85896000-85919800	Weak transcription	Lung	lung
7	chr9:85896400-85912600	Weak transcription	Gastric	stomach
8	chr9:85896400-85913400	Weak transcription	Brain Germinal Matrix	brain
9	chr9:85896600-85913000	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr9:85896800-85910800	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr9:85896800-85922800	Weak transcription	Spleen	Spleen
12	chr9:85897000-85912600	Weak transcription	Adipose Nuclei	Adipose
13	chr9:85897000-85912600	Weak transcription	Ovary	ovary
14	chr9:85897000-85912800	Weak transcription	Right Ventricle	heart
15	chr9:85897200-85912000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr9:85897200-85913000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr9:85897200-85919200	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr9:85897200-85922000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr9:85897400-85914800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr9:85905800-85919000	Weak transcription	Fetal Stomach	stomach
21	chr9:85906000-85911600	Weak transcription	Left Ventricle	heart
22	chr9:85906400-85915000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr9:85906600-85919400	Weak transcription	Stomach Smooth Muscle	stomach
24	chr9:85906800-85919600	Weak transcription	Pancreas	Pancrea
25	chr9:85908400-85913000	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr9:85908400-85913800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr9:85908600-85910600	Weak transcription	Fetal Muscle Trunk	muscle
28	chr9:85908800-85913000	Weak transcription	Fetal Muscle Leg	muscle
29	chr9:85909000-85914200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr9:85909000-85918400	Weak transcription	Brain Cingulate Gyrus	brain
31	chr9:85909200-85928000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr9:85910000-85913600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links