Variant report

Variant	rs17086295
Chromosome Location	chr9:86084538-86084539
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10746712	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs10746713	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs10780605	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs10868019	0.86[JPT][hapmap]
rs11140102	0.93[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11140103	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11140104	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11140105	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11140106	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11140109	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11140115	0.87[YRI][hapmap]
rs11140116	0.86[JPT][hapmap]
rs11140121	0.87[YRI][hapmap]
rs17086293	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17086403	0.86[YRI][hapmap]
rs60254558	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61213861	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7032181	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72746815	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86056000-86085200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr9:86074600-86093200	Weak transcription	Pancreas	Pancrea
3	chr9:86075200-86086000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr9:86079000-86085200	Weak transcription	Psoas Muscle	Psoas
5	chr9:86079400-86086400	Weak transcription	Right Ventricle	heart
6	chr9:86081400-86084800	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr9:86081400-86085200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr9:86081800-86085000	Weak transcription	HepG2	liver
9	chr9:86081800-86086400	Weak transcription	Right Atrium	heart
10	chr9:86082200-86084800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:86082600-86084600	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr9:86082600-86084800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr9:86082600-86085400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:86083600-86084600	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr9:86083800-86085000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr9:86084000-86085400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:86084000-86085400	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr9:86084000-86085400	Weak transcription	Left Ventricle	heart
19	chr9:86084000-86086200	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr9:86084000-86086600	Enhancers	Fetal Muscle Leg	muscle
21	chr9:86084000-86088000	Weak transcription	Lung	lung
22	chr9:86084200-86085400	Enhancers	H9 Cell Line	embryonic stem cell
23	chr9:86084200-86085400	Weak transcription	Fetal Intestine Large	intestine
24	chr9:86084400-86084800	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr9:86084400-86085200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr9:86084400-86085400	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr9:86084400-86085800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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