Variant report

Variant	rs17086403
Chromosome Location	chr9:86135188-86135189
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10868020	0.82[CHB][hapmap]
rs10868024	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11140115	0.82[CHB][hapmap]
rs11140116	0.82[ASW][hapmap];0.86[YRI][hapmap];0.84[AMR][1000 genomes]
rs11140119	0.92[CHB][hapmap]
rs11140121	0.92[CHB][hapmap]
rs11140122	0.91[ASN][1000 genomes]
rs11140123	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11140128	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11140130	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11140137	0.91[ASN][1000 genomes]
rs11140139	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[ASN][1000 genomes]
rs11140142	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11140143	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11793207	0.97[ASN][1000 genomes]
rs12352296	0.92[CHB][hapmap]
rs12376872	0.92[CHB][hapmap]
rs12380450	0.92[CHB][hapmap]
rs17086295	0.86[YRI][hapmap]
rs3860938	0.92[CHB][hapmap]
rs4317655	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7032181	1.00[YRI][hapmap]
rs7037655	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs7038103	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9314717	0.92[CHB][hapmap]
rs9314718	0.92[CHB][hapmap]
rs9314719	0.91[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1038884	chr9:86089963-86215800	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17086403	FRMD3	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86114800-86145800	Weak transcription	Aorta	Aorta
2	chr9:86115200-86141000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:86128000-86135600	Weak transcription	Psoas Muscle	Psoas
4	chr9:86129800-86141800	Weak transcription	Left Ventricle	heart
5	chr9:86135000-86136000	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr9:86135000-86136400	Enhancers	NHDF-Ad	bronchial
7	chr9:86135000-86137000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr9:86135000-86137800	Enhancers	Primary monocytes fromperipheralblood	blood

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