Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10746712	0.85[CEU][hapmap]
rs10746713	0.85[CEU][hapmap]
rs10780605	0.85[CEU][hapmap];0.82[AMR][1000 genomes]
rs10868019	0.85[CEU][hapmap]
rs10868020	0.82[CHB][hapmap]
rs10868024	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];0.94[ASN][1000 genomes]
rs11140115	0.82[CHB][hapmap]
rs11140119	0.92[CHB][hapmap]
rs11140121	0.92[CHB][hapmap]
rs11140122	0.84[ASN][1000 genomes]
rs11140123	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs11140128	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs11140130	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs11140137	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11140142	0.92[ASN][1000 genomes]
rs11140143	0.92[ASN][1000 genomes]
rs11793207	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12352296	0.92[CHB][hapmap]
rs12376872	0.92[CHB][hapmap]
rs12380450	0.92[CHB][hapmap]
rs17086403	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[ASN][1000 genomes]
rs3860938	0.92[CHB][hapmap]
rs4317655	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs7037655	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7038103	0.88[ASN][1000 genomes]
rs9314717	0.92[CHB][hapmap]
rs9314718	0.92[CHB][hapmap]
rs9314719	0.91[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1038884	chr9:86089963-86215800	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86114800-86145800	Weak transcription	Aorta	Aorta
2	chr9:86142200-86149400	Weak transcription	Left Ventricle	heart
3	chr9:86142200-86151200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:86142400-86147000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:86142800-86146000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr9:86144400-86145800	Weak transcription	HepG2	liver

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