Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:86118460..86121730-chr9:86121736..86127065,5	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10746710	0.89[AMR][1000 genomes]
rs10746711	0.89[AMR][1000 genomes]
rs10746712	0.89[AMR][1000 genomes]
rs10746713	0.89[AMR][1000 genomes]
rs10780605	0.86[AMR][1000 genomes]
rs10868019	0.89[AMR][1000 genomes]
rs10868024	0.94[ASN][1000 genomes]
rs11140113	0.89[AMR][1000 genomes]
rs11140122	0.94[ASN][1000 genomes]
rs11140123	0.98[ASN][1000 genomes]
rs11140128	0.98[ASN][1000 genomes]
rs11140130	0.98[ASN][1000 genomes]
rs11140137	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11140139	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11140142	0.93[ASN][1000 genomes]
rs11140143	0.93[ASN][1000 genomes]
rs17086403	0.97[ASN][1000 genomes]
rs4317655	0.99[ASN][1000 genomes]
rs7037655	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7038103	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1038884	chr9:86089963-86215800	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86107200-86123000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr9:86114800-86145800	Weak transcription	Aorta	Aorta
3	chr9:86115200-86141000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:86116200-86123000	Weak transcription	Fetal Brain Female	brain
5	chr9:86116200-86125600	Weak transcription	Hela-S3	cervix
6	chr9:86117000-86123200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:86117600-86124200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr9:86118400-86129000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr9:86119200-86123400	Weak transcription	Left Ventricle	heart
10	chr9:86119200-86124200	Weak transcription	Brain Angular Gyrus	brain
11	chr9:86119200-86125200	Weak transcription	Pancreas	Pancrea
12	chr9:86119400-86123400	Weak transcription	Right Atrium	heart
13	chr9:86119400-86123400	Weak transcription	Spleen	Spleen
14	chr9:86119400-86124600	Weak transcription	Ovary	ovary
15	chr9:86119400-86127800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr9:86120600-86123000	Weak transcription	Adipose Nuclei	Adipose
17	chr9:86121000-86123400	Weak transcription	Fetal Muscle Leg	muscle
18	chr9:86121000-86125000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr9:86121000-86125000	Weak transcription	Psoas Muscle	Psoas
20	chr9:86121400-86123000	Weak transcription	HepG2	liver
21	chr9:86121400-86125800	Weak transcription	Fetal Kidney	kidney
22	chr9:86121600-86123000	Weak transcription	Fetal Heart	heart

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