Variant report

Variant	rs11140130
Chromosome Location	chr9:86115233-86115234
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10868020	0.82[CHB][hapmap]
rs10868024	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11140109	1.00[YRI][hapmap]
rs11140115	0.82[CHB][hapmap]
rs11140117	0.81[CHB][hapmap]
rs11140119	0.92[CHB][hapmap]
rs11140121	0.92[CHB][hapmap]
rs11140122	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11140123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140128	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140137	0.88[ASN][1000 genomes]
rs11140139	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs11140142	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11140143	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11793207	0.98[ASN][1000 genomes]
rs12352296	0.92[CHB][hapmap]
rs12376872	0.92[CHB][hapmap]
rs12380450	0.92[CHB][hapmap]
rs17086403	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3860938	0.92[CHB][hapmap]
rs4317655	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7037655	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs7038103	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9314717	0.92[CHB][hapmap]
rs9314718	0.92[CHB][hapmap]
rs9314719	0.92[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1038884	chr9:86089963-86215800	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86107200-86123000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr9:86107600-86118600	Weak transcription	Ovary	ovary
3	chr9:86107800-86118400	Weak transcription	Left Ventricle	heart
4	chr9:86107800-86118600	Weak transcription	Right Atrium	heart
5	chr9:86108000-86120200	Weak transcription	Psoas Muscle	Psoas
6	chr9:86108000-86120200	Weak transcription	Right Ventricle	heart
7	chr9:86114200-86115400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr9:86114400-86116200	Enhancers	Hela-S3	cervix
9	chr9:86114400-86117200	Enhancers	NHDF-Ad	bronchial
10	chr9:86114400-86119600	Weak transcription	HepG2	liver
11	chr9:86114800-86145800	Weak transcription	Aorta	Aorta
12	chr9:86115000-86115400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:86115000-86115600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr9:86115000-86116000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr9:86115200-86115800	Enhancers	Muscle Satellite Cultured Cells	--
16	chr9:86115200-86116200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr9:86115200-86141000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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