Variant report

Variant	rs7032181
Chromosome Location	chr9:86089105-86089106
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10746712	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs10746713	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs10780605	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs10868019	0.86[JPT][hapmap]
rs11140102	1.00[CHB][hapmap];0.93[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11140103	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11140104	0.86[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11140105	0.86[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11140106	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11140109	0.86[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11140116	0.86[JPT][hapmap];0.86[YRI][hapmap]
rs17086293	0.86[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17086295	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17086403	1.00[YRI][hapmap]
rs60254558	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61213861	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72746815	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86074600-86093200	Weak transcription	Pancreas	Pancrea
2	chr9:86085000-86090800	Enhancers	HepG2	liver
3	chr9:86086000-86089400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr9:86086000-86090000	Enhancers	Stomach Mucosa	stomach
5	chr9:86086400-86089800	Enhancers	Right Atrium	heart
6	chr9:86086600-86090000	Enhancers	Fetal Intestine Small	intestine
7	chr9:86086800-86090000	Enhancers	Small Intestine	intestine
8	chr9:86087000-86092400	Weak transcription	Psoas Muscle	Psoas
9	chr9:86087600-86089200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr9:86087600-86089200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
11	chr9:86088000-86089200	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr9:86088000-86089400	Active TSS	Rectal Smooth Muscle	rectum
13	chr9:86088400-86089400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr9:86088400-86090000	Enhancers	Fetal Intestine Large	intestine
15	chr9:86088600-86089400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr9:86088800-86089200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
17	chr9:86088800-86089600	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr9:86088800-86089800	Enhancers	Hela-S3	cervix
19	chr9:86089000-86089200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr9:86089000-86089200	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr9:86089000-86089200	Enhancers	Adipose Nuclei	Adipose
22	chr9:86089000-86089400	Enhancers	Duodenum Mucosa	Duodenum
23	chr9:86089000-86089400	Enhancers	GM12878-XiMat	blood
24	chr9:86089000-86090000	Enhancers	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links