Variant report

Variant	rs17093158
Chromosome Location	chr14:55672348-55672349
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10129944	1.00[MEX][hapmap]
rs10137192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10138250	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10138287	1.00[MEX][hapmap]
rs10140769	1.00[AMR][1000 genomes]
rs10149038	1.00[MEX][hapmap]
rs13379284	1.00[MEX][hapmap]
rs2182209	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7159339	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8010658	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs9323281	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035158	chr14:55638386-55684228	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55669000-55674400	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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