Variant report

Variant	rs13379284
Chromosome Location	chr14:55621009-55621010
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10132251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10133318	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10133839	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10134482	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10134533	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10135042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10137382	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10138287	0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10140700	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10141962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10142150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10142435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10143190	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10146432	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10148371	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10149038	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10151981	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10438128	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17128204	1.00[EUR][1000 genomes]
rs17128286	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17128299	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17128411	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs28415601	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28458773	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28459500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28488729	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28584735	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34630492	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60302297	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60342915	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8010658	1.00[MEX][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13379284	DLG7	cis	multi-tissue	Pritchard

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55598600-55656600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:55604000-55636400	Strong transcription	Fetal Thymus	thymus
3	chr14:55604600-55627800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr14:55604800-55623200	Weak transcription	Brain Germinal Matrix	brain
5	chr14:55605000-55627600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr14:55605200-55656000	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr14:55605400-55657000	Weak transcription	Fetal Kidney	kidney
8	chr14:55606400-55626600	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr14:55606600-55656000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:55607000-55656000	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr14:55607200-55652200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr14:55607600-55651800	Strong transcription	H1 Cell Line	embryonic stem cell
13	chr14:55607600-55655200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
14	chr14:55610600-55621600	Strong transcription	GM12878-XiMat	blood
15	chr14:55610600-55651600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr14:55610600-55655400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr14:55610600-55655600	Strong transcription	Dnd41	blood
18	chr14:55610800-55656000	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr14:55611000-55656000	Weak transcription	Fetal Heart	heart
20	chr14:55611200-55622800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr14:55611200-55643400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr14:55611400-55621800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr14:55611400-55630200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr14:55611600-55628400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr14:55611600-55630000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr14:55611600-55656600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr14:55612000-55622000	Weak transcription	Small Intestine	intestine
28	chr14:55612000-55623200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr14:55612400-55637400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr14:55613000-55621800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr14:55613400-55621800	Weak transcription	Left Ventricle	heart
32	chr14:55613400-55626200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr14:55613400-55639200	Weak transcription	Fetal Intestine Small	intestine
34	chr14:55613400-55657800	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr14:55614000-55623200	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr14:55614000-55623600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr14:55614000-55624400	Weak transcription	Fetal Intestine Large	intestine
38	chr14:55614200-55622800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr14:55614200-55633600	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr14:55614800-55630400	Weak transcription	Duodenum Mucosa	Duodenum
41	chr14:55615000-55625800	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr14:55615200-55627600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr14:55615400-55622600	Weak transcription	Thymus	Thymus
44	chr14:55617000-55625200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr14:55617000-55630200	Weak transcription	Osteobl	bone
46	chr14:55617200-55623600	Strong transcription	HUVEC	blood vessel
47	chr14:55617400-55625200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr14:55617800-55621200	Strong transcription	HMEC	breast
49	chr14:55617800-55625400	Strong transcription	HepG2	liver
50	chr14:55617800-55626800	Strong transcription	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links