Variant report

Variant	rs28415601
Chromosome Location	chr14:55604308-55604309
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:41)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:41 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr14:55604220-55604370	HFF-Myc	foreskin:	n/a	n/a
2	CTCF	chr14:55604280-55604430	HPAF	blood vessel:	n/a	n/a
3	CTCF	chr14:55604260-55604410	AG10803	skin:	n/a	n/a
4	CTCF	chr14:55604200-55604350	HFF	foreskin:	n/a	n/a
5	POLR2A	chr14:55603834-55604477	U87	brain:	n/a	n/a
6	CTCF	chr14:55604280-55604430	HCFaa	heart:	n/a	n/a
7	RAD21	chr14:55604157-55604508	IMR90	lung:	n/a	n/a
8	CTCF	chr14:55604240-55604390	AG09309	skin:	n/a	n/a
9	CTCF	chr14:55604280-55604430	AG04450	lung:	n/a	n/a
10	CTCF	chr14:55604300-55604450	HRPEpiC	eye:	n/a	n/a
11	POLR2A	chr14:55604023-55604524	PFSK-1	brain:	n/a	n/a
12	CTCF	chr14:55604222-55604507	IMR90	lung:	n/a	n/a
13	POLR2A	chr14:55604208-55604494	Hela-S3	cervix:	n/a	n/a
14	CTCF	chr14:55604280-55604430	AG04449	skin:	n/a	n/a
15	CTCF	chr14:55604280-55604430	BJ	skin:	n/a	n/a
16	CTCF	chr14:55604280-55604430	HCM	heart:	n/a	n/a
17	CTCF	chr14:55604280-55604430	HA-sp	spinal cord:	n/a	n/a
18	CTCF	chr14:55604280-55604430	AG09319	gingival:	n/a	n/a
19	CTCF	chr14:55604300-55604450	HMF	breast:	n/a	n/a
20	POLR2A	chr14:55603800-55604477	U87	brain:	n/a	n/a
21	CTCF	chr14:55604260-55604410	AG09319	gingival:	n/a	n/a
22	POLR2A	chr14:55604210-55604476	HUVEC	blood vessel:	n/a	n/a
23	CTCF	chr14:55604280-55604430	HMEC	breast:	n/a	n/a
24	CTCF	chr14:55604200-55604350	NHLF	lung:	n/a	n/a
25	CTCF	chr14:55604280-55604430	AoAF	blood vessel:	n/a	n/a
26	CTCF	chr14:55604300-55604450	HBMEC	blood vessel:	n/a	n/a
27	STAT3	chr14:55604307-55604432	MCF10A-Er-Src	breast:	n/a	n/a
28	CTCF	chr14:55604280-55604430	HPF	lung:	n/a	n/a
29	POLR2A	chr14:55603873-55604733	U87	brain:	n/a	n/a
30	CTCF	chr14:55604280-55604430	HCPEpiC	choroid plexus:	n/a	n/a
31	CTCF	chr14:55604280-55604430	HRPEpiC	eye:	n/a	n/a
32	CTCF	chr14:55604300-55604450	AoAF	blood vessel:	n/a	n/a
33	CTCF	chr14:55604260-55604530	HMEC	breast:	n/a	n/a
34	CTCF	chr14:55604300-55604450	AG09309	skin:	n/a	n/a
35	CTCF	chr14:55604260-55604410	HAc	cerebellar:	n/a	n/a
36	RAD21	chr14:55604140-55604439	SK-N-SH_RA	brain:	n/a	n/a
37	CTCF	chr14:55604280-55604430	HBMEC	blood vessel:	n/a	n/a
38	CTCF	chr14:55604300-55604450	NHDF-neo	bronchial:	n/a	n/a
39	CTCF	chr14:55604240-55604390	HAc	cerebellar:	n/a	n/a
40	CTCF	chr14:55604260-55604410	AG04450	lung:	n/a	n/a
41	POLR2A	chr14:55604044-55604499	Hela-S3	cervix:	n/a	n/a

No data

Variant related genes	Relation type
LGALS3	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10132251	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10133318	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10133839	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10134482	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10134533	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10135042	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10137382	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10138287	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10140700	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10141962	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10142150	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10142435	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10143190	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10146432	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10148371	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10149038	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10151981	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10438128	1.00[EUR][1000 genomes]
rs13379284	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17128204	1.00[EUR][1000 genomes]
rs17128286	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17128299	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17128411	1.00[EUR][1000 genomes]
rs28458773	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28459500	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28488729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28584735	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34630492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60302297	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60342915	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55595400-55606200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr14:55596600-55606400	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr14:55597000-55613000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:55597200-55604600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr14:55597200-55604800	Weak transcription	GM12878-XiMat	blood
6	chr14:55597200-55605200	Weak transcription	A549	lung
7	chr14:55597200-55606600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr14:55597200-55607400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr14:55598400-55607600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr14:55598400-55613000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr14:55598600-55607800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr14:55598600-55656600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr14:55598800-55605200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr14:55598800-55605800	Weak transcription	HepG2	liver
15	chr14:55598800-55606000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr14:55598800-55606600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr14:55598800-55610800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr14:55598800-55611800	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr14:55598800-55613000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr14:55599200-55605000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr14:55599200-55607600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr14:55599600-55604800	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr14:55599600-55606400	Weak transcription	Dnd41	blood
24	chr14:55600200-55604800	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr14:55600200-55605200	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr14:55600200-55613200	Weak transcription	Psoas Muscle	Psoas
27	chr14:55600600-55611600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr14:55600800-55609400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr14:55601000-55604600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr14:55601200-55605000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr14:55601600-55607000	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr14:55601600-55610800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr14:55602000-55605000	Enhancers	Fetal Heart	heart
34	chr14:55602400-55604600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr14:55602400-55604800	Enhancers	Left Ventricle	heart
36	chr14:55602400-55605200	Enhancers	Small Intestine	intestine
37	chr14:55602600-55604600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr14:55602600-55604600	Enhancers	HSMMtube	muscle
39	chr14:55602600-55604600	Genic enhancers	NHEK	skin
40	chr14:55602600-55606000	Genic enhancers	Sigmoid Colon	Sigmoid Colon
41	chr14:55602600-55606800	Genic enhancers	Stomach Mucosa	stomach
42	chr14:55602600-55613800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr14:55602800-55605000	Genic enhancers	Colonic Mucosa	Colon
44	chr14:55603000-55604400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr14:55603000-55604800	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr14:55603000-55605000	Weak transcription	Thymus	Thymus
47	chr14:55603200-55604800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr14:55603200-55607600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr14:55603200-55615400	Strong transcription	Hela-S3	cervix
50	chr14:55603400-55604400	Enhancers	Pancreas	Pancrea

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