Variant report

Variant	rs17093413
Chromosome Location	chr10:92078070-92078071
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17093237	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59952167	0.81[EUR][1000 genomes]
rs60573970	0.89[EUR][1000 genomes]
rs957646	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895883	chr10:91610601-92195828	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1039731	chr10:91645718-92198264	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv540743	chr10:91645718-92198264	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv467430	chr10:91681344-92297943	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv551875	chr10:91681344-92297943	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	esv3375393	chr10:91880933-92243227	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv2422237	chr10:91940542-92547558	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1037720	chr10:92063438-92259359	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92073800-92078800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:92074200-92079000	Weak transcription	NHDF-Ad	bronchial
3	chr10:92074400-92078600	Weak transcription	HSMM	muscle
4	chr10:92074400-92078800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr10:92074600-92078600	Weak transcription	NH-A	brain
6	chr10:92074800-92078200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:92074800-92078200	Weak transcription	NHEK	skin
8	chr10:92074800-92078400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:92074800-92078400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:92074800-92078400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:92074800-92078400	Weak transcription	HMEC	breast
12	chr10:92074800-92078400	Weak transcription	NHLF	lung
13	chr10:92076400-92078800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:92076800-92080000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:92076800-92080600	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr10:92076800-92081000	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr10:92077000-92078800	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr10:92077000-92080600	Enhancers	H1 Cell Line	embryonic stem cell
19	chr10:92077200-92078400	Weak transcription	HUVEC	blood vessel
20	chr10:92077200-92078600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr10:92077200-92079200	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr10:92077200-92080400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr10:92077600-92078800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:92077600-92079000	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr10:92077800-92079000	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr10:92077800-92079400	Enhancers	Placenta Amnion	Placenta Amnion
27	chr10:92077800-92081200	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr10:92078000-92078400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr10:92078000-92080200	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr10:92078000-92080200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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