Variant report

Variant	rs60573970
Chromosome Location	chr10:92048517-92048518
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:92048060..92049321-chr10:92352261..92353257,6	MCF-7	breast:
2	chr10:92046589..92049031-chr10:92410934..92413664,2	MCF-7	breast:
3	chr10:92047473..92050346-chr10:92165247..92168101,3	MCF-7	breast:
4	chr10:92047856..92048792-chr10:92412267..92413265,3	MCF-7	breast:
5	chr10:91908451..91909024-chr10:92048226..92048868,2	MCF-7	breast:
6	chr10:92047878..92048766-chr10:92339403..92340022,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17093237	0.87[EUR][1000 genomes]
rs17093413	0.89[EUR][1000 genomes]
rs59952167	0.85[EUR][1000 genomes]
rs73312942	0.92[AFR][1000 genomes]
rs957646	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895883	chr10:91610601-92195828	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1039731	chr10:91645718-92198264	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv540743	chr10:91645718-92198264	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv467430	chr10:91681344-92297943	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv551875	chr10:91681344-92297943	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	esv3375393	chr10:91880933-92243227	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv2422237	chr10:91940542-92547558	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92041000-92048600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:92048200-92049800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr10:92048200-92053600	Weak transcription	Fetal Intestine Small	intestine
4	chr10:92048400-92048600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:92048400-92048600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr10:92048400-92049000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:92048400-92049000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr10:92048400-92049000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr10:92048400-92049000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr10:92048400-92049200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:92048400-92049400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr10:92048400-92049400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:92048400-92049400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr10:92048400-92049400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr10:92048400-92049400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr10:92048400-92049400	Enhancers	GM12878-XiMat	blood
17	chr10:92048400-92049400	Enhancers	NHEK	skin
18	chr10:92048400-92049400	Enhancers	NHLF	lung
19	chr10:92048400-92049800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:92048400-92049800	Enhancers	Osteobl	bone
21	chr10:92048400-92050200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr10:92048400-92051400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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