Variant report

Variant	rs17094350
Chromosome Location	chr14:84489966-84489967
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:84489726..84491906-chr14:84495009..84496588,2	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10484123	0.95[AFR][1000 genomes]
rs1462344	1.00[EUR][1000 genomes]
rs1462345	1.00[EUR][1000 genomes]
rs1462357	1.00[EUR][1000 genomes]
rs1676056	1.00[EUR][1000 genomes]
rs1676059	1.00[EUR][1000 genomes]
rs17119377	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17119387	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17119411	0.83[AFR][1000 genomes]
rs17119414	0.95[AFR][1000 genomes]
rs17119419	0.95[AFR][1000 genomes]
rs17119425	0.95[AFR][1000 genomes]
rs17119427	0.95[AFR][1000 genomes]
rs17119428	0.95[AFR][1000 genomes]
rs17119435	0.95[AFR][1000 genomes]
rs17119437	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17119438	0.95[AFR][1000 genomes]
rs17119440	0.95[AFR][1000 genomes]
rs17119443	0.95[AFR][1000 genomes]
rs17119458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17119468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17119485	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17119497	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17119501	1.00[EUR][1000 genomes]
rs1779560	1.00[EUR][1000 genomes]
rs1779571	1.00[EUR][1000 genomes]
rs1779572	1.00[EUR][1000 genomes]
rs2372555	0.95[AFR][1000 genomes]
rs2372556	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2372557	0.95[AFR][1000 genomes]
rs2372558	0.95[AFR][1000 genomes]
rs2372559	0.95[AFR][1000 genomes]
rs4258535	0.95[AFR][1000 genomes]
rs4343201	0.95[AFR][1000 genomes]
rs4502139	0.95[AFR][1000 genomes]
rs4562984	0.95[AFR][1000 genomes]
rs6574765	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6574766	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7144926	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7150612	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7152811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72699290	0.95[AFR][1000 genomes]
rs72699293	0.95[AFR][1000 genomes]
rs72699295	0.85[AFR][1000 genomes]
rs72699300	0.95[AFR][1000 genomes]
rs72701003	0.90[AFR][1000 genomes]
rs72701006	0.95[AFR][1000 genomes]
rs72701011	0.95[AFR][1000 genomes]
rs72701012	0.95[AFR][1000 genomes]
rs72701014	0.95[AFR][1000 genomes]
rs72701015	0.85[AFR][1000 genomes]
rs72701018	0.95[AFR][1000 genomes]
rs72701023	0.95[AFR][1000 genomes]
rs72701024	0.95[AFR][1000 genomes]
rs72701025	0.95[AFR][1000 genomes]
rs72701026	0.95[AFR][1000 genomes]
rs72701027	0.89[AFR][1000 genomes]
rs72701029	0.95[AFR][1000 genomes]
rs72701030	0.90[AFR][1000 genomes]
rs8004309	0.95[AFR][1000 genomes]
rs8004623	0.95[AFR][1000 genomes]
rs8004926	0.95[AFR][1000 genomes]
rs8005774	1.00[EUR][1000 genomes]
rs8009976	0.95[AFR][1000 genomes]
rs8010331	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8010352	0.95[AFR][1000 genomes]
rs8010667	0.95[AFR][1000 genomes]
rs8014313	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8015994	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1382	chr14:84487547-84532237	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84473400-84490600	Weak transcription	Ovary	ovary
2	chr14:84489400-84492000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:84489600-84490400	Enhancers	Fetal Lung	lung
4	chr14:84489800-84491000	Enhancers	Colon Smooth Muscle	Colon
5	chr14:84489800-84493800	Weak transcription	Fetal Stomach	stomach

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