Variant report

Variant	rs17119387
Chromosome Location	chr14:84462486-84462487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10484123	0.84[AFR][1000 genomes]
rs1462344	1.00[EUR][1000 genomes]
rs1462345	1.00[EUR][1000 genomes]
rs1462357	1.00[EUR][1000 genomes]
rs1676056	1.00[EUR][1000 genomes]
rs1676059	1.00[EUR][1000 genomes]
rs17094350	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17119377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17119414	0.84[AFR][1000 genomes]
rs17119419	0.84[AFR][1000 genomes]
rs17119425	0.84[AFR][1000 genomes]
rs17119427	0.84[AFR][1000 genomes]
rs17119428	0.84[AFR][1000 genomes]
rs17119435	0.84[AFR][1000 genomes]
rs17119437	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17119438	0.84[AFR][1000 genomes]
rs17119440	0.84[AFR][1000 genomes]
rs17119443	0.84[AFR][1000 genomes]
rs17119458	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17119468	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17119485	1.00[EUR][1000 genomes]
rs17119497	1.00[EUR][1000 genomes]
rs17119501	1.00[EUR][1000 genomes]
rs1779560	1.00[EUR][1000 genomes]
rs1779571	1.00[EUR][1000 genomes]
rs1779572	1.00[EUR][1000 genomes]
rs2372555	0.84[AFR][1000 genomes]
rs2372556	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2372557	0.84[AFR][1000 genomes]
rs2372558	0.84[AFR][1000 genomes]
rs2372559	0.84[AFR][1000 genomes]
rs4258535	0.84[AFR][1000 genomes]
rs4343201	0.84[AFR][1000 genomes]
rs4502139	0.84[AFR][1000 genomes]
rs4562984	0.84[AFR][1000 genomes]
rs6574765	1.00[EUR][1000 genomes]
rs6574766	1.00[EUR][1000 genomes]
rs7144926	1.00[EUR][1000 genomes]
rs7150612	1.00[EUR][1000 genomes]
rs7152811	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72699290	0.84[AFR][1000 genomes]
rs72699293	0.84[AFR][1000 genomes]
rs72699300	0.84[AFR][1000 genomes]
rs72701006	0.84[AFR][1000 genomes]
rs72701011	0.84[AFR][1000 genomes]
rs72701012	0.84[AFR][1000 genomes]
rs72701014	0.84[AFR][1000 genomes]
rs72701018	0.84[AFR][1000 genomes]
rs72701023	0.84[AFR][1000 genomes]
rs72701024	0.84[AFR][1000 genomes]
rs72701025	0.84[AFR][1000 genomes]
rs72701026	0.84[AFR][1000 genomes]
rs72701029	0.84[AFR][1000 genomes]
rs8004309	0.84[AFR][1000 genomes]
rs8004623	0.84[AFR][1000 genomes]
rs8004926	0.84[AFR][1000 genomes]
rs8005774	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8009976	0.84[AFR][1000 genomes]
rs8010331	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8010352	0.84[AFR][1000 genomes]
rs8010667	0.84[AFR][1000 genomes]
rs8014313	1.00[EUR][1000 genomes]
rs8015994	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039271	chr14:84405561-84467550	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84462200-84462600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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