Variant report

Variant	rs17095866
Chromosome Location	chr12:45804636-45804637
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45803063..45804770-chr12:45808149..45810267,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1025088	1.00[CEU][hapmap]
rs10736024	1.00[CEU][hapmap]
rs10785564	1.00[CEU][hapmap]
rs11182980	1.00[CEU][hapmap]
rs12578188	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12578314	1.00[CEU][hapmap]
rs12578638	0.83[CHB][hapmap]
rs12579080	1.00[CEU][hapmap]
rs12580320	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12580810	0.91[CHB][hapmap];0.84[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12581525	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12582369	1.00[CEU][hapmap]
rs17095584	1.00[CEU][hapmap]
rs17095688	1.00[CEU][hapmap]
rs17095706	1.00[CEU][hapmap]
rs17095713	1.00[CEU][hapmap]
rs17095716	1.00[CEU][hapmap]
rs17095721	1.00[CEU][hapmap]
rs17095722	1.00[CEU][hapmap]
rs17095723	1.00[CEU][hapmap]
rs17095736	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17095784	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17095888	1.00[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17095911	1.00[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1896027	1.00[CEU][hapmap]
rs2037856	1.00[CEU][hapmap]
rs2037857	1.00[CEU][hapmap]
rs2081592	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34066087	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3920257	1.00[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs41331147	1.00[CEU][hapmap]
rs4583038	0.83[CHB][hapmap]
rs4768087	1.00[CEU][hapmap]
rs4768600	1.00[CEU][hapmap]
rs4768606	1.00[CEU][hapmap]
rs60457106	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6582542	1.00[CEU][hapmap]
rs7135029	1.00[CEU][hapmap]
rs7136281	1.00[CEU][hapmap]
rs7294399	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7296058	0.83[CHB][hapmap]
rs7304389	1.00[CEU][hapmap]
rs7304749	1.00[CEU][hapmap]
rs73281585	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74080884	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9788104	0.83[CHB][hapmap];0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050923	chr12:45581310-45808289	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45744800-45809200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr12:45752200-45809200	Weak transcription	Small Intestine	intestine
3	chr12:45759000-45805200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr12:45759200-45822600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr12:45764400-45821000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr12:45764600-45815400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr12:45772600-45815400	Weak transcription	K562	blood
8	chr12:45774800-45811400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr12:45780400-45829800	Weak transcription	Brain Anterior Caudate	brain
10	chr12:45783200-45818800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr12:45783400-45826400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr12:45786200-45805400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr12:45786200-45806200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr12:45786200-45809200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr12:45786400-45806200	Weak transcription	Esophagus	oesophagus
16	chr12:45786600-45806000	Weak transcription	Ovary	ovary
17	chr12:45786600-45827000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr12:45792000-45828600	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr12:45792600-45822600	Weak transcription	Colonic Mucosa	Colon
20	chr12:45792600-45827000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr12:45792800-45811800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr12:45793000-45827600	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr12:45794200-45807400	Strong transcription	A549	lung
24	chr12:45794200-45823200	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr12:45794400-45807400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr12:45794600-45806800	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr12:45794600-45809200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr12:45794600-45812200	Weak transcription	Fetal Brain Male	brain
29	chr12:45794800-45807600	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr12:45795000-45812200	Weak transcription	Fetal Brain Female	brain
31	chr12:45795200-45808000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr12:45795200-45813200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr12:45795200-45817800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr12:45795400-45813400	Strong transcription	Dnd41	blood
35	chr12:45795600-45807000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr12:45795600-45807600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr12:45795600-45825600	Strong transcription	Fetal Intestine Large	intestine
38	chr12:45795800-45806800	Strong transcription	Placenta	Placenta
39	chr12:45795800-45808200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr12:45796000-45807400	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr12:45796000-45812400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr12:45796400-45812200	Weak transcription	Hela-S3	cervix
43	chr12:45796400-45829600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr12:45796600-45808000	Strong transcription	GM12878-XiMat	blood
45	chr12:45796600-45828400	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr12:45796600-45828600	Weak transcription	Brain Substantia Nigra	brain
47	chr12:45796600-45828800	Weak transcription	Brain Angular Gyrus	brain
48	chr12:45797600-45805400	Weak transcription	Aorta	Aorta
49	chr12:45797600-45819200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr12:45798600-45806600	Weak transcription	Rectal Mucosa Donor 29	rectum

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