Variant report

Variant	rs17095911
Chromosome Location	chr12:45825453-45825454
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1025088	1.00[CEU][hapmap];0.81[CHD][hapmap]
rs10736024	1.00[CEU][hapmap]
rs10785564	1.00[CEU][hapmap]
rs11182980	1.00[CEU][hapmap]
rs12578188	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes]
rs12578314	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs12578982	1.00[AMR][1000 genomes]
rs12579080	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs12580208	1.00[AMR][1000 genomes]
rs12580320	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12580810	0.82[CHB][hapmap];0.84[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12581525	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12581841	1.00[AMR][1000 genomes]
rs12582025	1.00[AMR][1000 genomes]
rs12582369	1.00[CEU][hapmap]
rs17095584	1.00[CEU][hapmap]
rs17095688	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs17095706	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs17095713	1.00[CEU][hapmap]
rs17095716	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17095721	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17095722	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs17095723	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17095736	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];1.00[EUR][1000 genomes]
rs17095784	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.90[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095866	1.00[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17095888	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1896027	1.00[CEU][hapmap]
rs2037856	1.00[CEU][hapmap]
rs2037857	1.00[CEU][hapmap]
rs2081592	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34066087	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3759079	1.00[AMR][1000 genomes]
rs3920257	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41331147	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs4768087	1.00[CEU][hapmap]
rs4768600	1.00[CEU][hapmap]
rs4768606	1.00[CEU][hapmap]
rs60457106	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6582542	1.00[CEU][hapmap]
rs7135029	1.00[CEU][hapmap]
rs7136281	1.00[CEU][hapmap]
rs7294399	1.00[EUR][1000 genomes]
rs7304389	1.00[CEU][hapmap]
rs7304749	1.00[CEU][hapmap]
rs73281585	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs74080884	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7486228	1.00[AMR][1000 genomes]

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45780400-45829800	Weak transcription	Brain Anterior Caudate	brain
2	chr12:45783400-45826400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr12:45786600-45827000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:45792000-45828600	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr12:45792600-45827000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr12:45793000-45827600	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr12:45795600-45825600	Strong transcription	Fetal Intestine Large	intestine
8	chr12:45796400-45829600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr12:45796600-45828400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr12:45796600-45828600	Weak transcription	Brain Substantia Nigra	brain
11	chr12:45796600-45828800	Weak transcription	Brain Angular Gyrus	brain
12	chr12:45804400-45828000	Weak transcription	Brain Hippocampus Middle	brain
13	chr12:45804400-45830200	Weak transcription	Brain Germinal Matrix	brain
14	chr12:45806400-45825600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr12:45806800-45826000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr12:45806800-45829800	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr12:45809600-45826600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr12:45810600-45826000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr12:45811600-45826800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr12:45811600-45829400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr12:45812200-45825800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr12:45812200-45826600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr12:45812600-45832000	Weak transcription	Small Intestine	intestine
24	chr12:45813000-45829600	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr12:45813800-45825800	Strong transcription	Adipose Nuclei	Adipose
26	chr12:45814000-45825600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr12:45814400-45825600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr12:45814800-45825600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr12:45814800-45825800	Strong transcription	Fetal Muscle Trunk	muscle
30	chr12:45814800-45825800	Strong transcription	Skeletal Muscle Female	skeletal muscle
31	chr12:45814800-45826000	Strong transcription	Skeletal Muscle Male	skeletal muscle
32	chr12:45816200-45825600	Strong transcription	Fetal Muscle Leg	muscle
33	chr12:45816400-45828200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr12:45817000-45826200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr12:45817400-45828800	Weak transcription	NHEK	skin
36	chr12:45817800-45829200	Weak transcription	Psoas Muscle	Psoas
37	chr12:45818000-45826400	Weak transcription	Fetal Kidney	kidney
38	chr12:45818000-45828600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr12:45818400-45825600	Strong transcription	A549	lung
40	chr12:45819000-45825600	Strong transcription	Stomach Smooth Muscle	stomach
41	chr12:45819000-45825800	Strong transcription	Duodenum Smooth Muscle	Duodenum
42	chr12:45819400-45825600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr12:45819400-45827600	Strong transcription	Liver	Liver
44	chr12:45819600-45825600	Strong transcription	Colon Smooth Muscle	Colon
45	chr12:45819600-45830000	Weak transcription	GM12878-XiMat	blood
46	chr12:45819800-45826400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr12:45820000-45825600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr12:45820000-45826600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr12:45820000-45828000	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr12:45820200-45825600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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