Variant report

Variant	rs17096322
Chromosome Location	chr1:75633599-75633600
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10493562	1.00[EUR][1000 genomes]
rs17096329	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17096455	1.00[EUR][1000 genomes]
rs17096473	1.00[EUR][1000 genomes]
rs17096626	1.00[EUR][1000 genomes]
rs17096698	1.00[EUR][1000 genomes]
rs17096706	1.00[EUR][1000 genomes]
rs17096801	1.00[EUR][1000 genomes]
rs6657914	1.00[EUR][1000 genomes]
rs6675106	1.00[EUR][1000 genomes]
rs6678156	1.00[EUR][1000 genomes]
rs6685905	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871743	chr1:75235082-75714554	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3368999	chr1:75524762-75933220	Bivalent/Poised TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:75632200-75634000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:75632200-75634000	Enhancers	Adipose Nuclei	Adipose
3	chr1:75632600-75633600	Enhancers	Liver	Liver
4	chr1:75633400-75633600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:75633400-75633600	Enhancers	Ovary	ovary
6	chr1:75633400-75634000	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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