Variant report

Variant	rs17096801
Chromosome Location	chr1:75833740-75833741
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10493562	1.00[EUR][1000 genomes]
rs17096322	1.00[EUR][1000 genomes]
rs17096329	1.00[EUR][1000 genomes]
rs17096455	1.00[EUR][1000 genomes]
rs17096473	1.00[EUR][1000 genomes]
rs17096626	1.00[EUR][1000 genomes]
rs17096698	1.00[EUR][1000 genomes]
rs17096706	1.00[EUR][1000 genomes]
rs6657914	1.00[EUR][1000 genomes]
rs6675106	1.00[EUR][1000 genomes]
rs6678156	1.00[EUR][1000 genomes]
rs6685905	1.00[EUR][1000 genomes]
rs6697516	1.00[EUR][1000 genomes]
rs74089269	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3368999	chr1:75524762-75933220	Bivalent/Poised TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1013952	chr1:75716654-75936048	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv535004	chr1:75716654-75936048	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1455	chr1:75812377-75864182	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv519329	chr1:75830438-76358591	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:75831200-75841000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:75831400-75841400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:75833000-75834400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:75833200-75836200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr1:75833400-75837000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr1:75833400-75839200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:75833400-75839200	Weak transcription	K562	blood
8	chr1:75833400-75841000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr1:75833600-75834000	Weak transcription	Primary B cells from cord blood	blood
10	chr1:75833600-75837600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr1:75833600-75839200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:75833600-75841200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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