Variant report

Variant	rs17096706
Chromosome Location	chr1:75779799-75779800
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10493562	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17096252	0.91[AFR][1000 genomes]
rs17096261	0.91[AFR][1000 genomes]
rs17096275	0.91[AFR][1000 genomes]
rs17096288	0.91[AFR][1000 genomes]
rs17096322	1.00[EUR][1000 genomes]
rs17096329	1.00[EUR][1000 genomes]
rs17096455	1.00[EUR][1000 genomes]
rs17096473	1.00[EUR][1000 genomes]
rs17096521	1.00[AFR][1000 genomes]
rs17096626	1.00[EUR][1000 genomes]
rs17096698	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17096801	1.00[EUR][1000 genomes]
rs6657914	1.00[EUR][1000 genomes]
rs6675106	1.00[EUR][1000 genomes]
rs6678156	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6685905	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6697516	1.00[EUR][1000 genomes]
rs74089269	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3368999	chr1:75524762-75933220	Bivalent/Poised TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1013952	chr1:75716654-75936048	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv535004	chr1:75716654-75936048	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:75779400-75780400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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