Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10465725	1.00[CEU][hapmap]
rs11161872	1.00[CEU][hapmap]
rs11161947	1.00[AFR][1000 genomes]
rs11162003	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11162065	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs1146594	1.00[CEU][hapmap]
rs1146603	1.00[CEU][hapmap]
rs12068611	0.87[AFR][1000 genomes]
rs12068640	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12080932	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12084381	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12084383	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12086384	0.90[AFR][1000 genomes]
rs12086506	1.00[CEU][hapmap]
rs12087619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12089337	1.00[CEU][hapmap]
rs12090389	1.00[CEU][hapmap]
rs17097567	1.00[CEU][hapmap]
rs17097696	1.00[CEU][hapmap]
rs17097707	1.00[CEU][hapmap]
rs17097710	1.00[CEU][hapmap];0.88[MKK][hapmap]
rs2066214	0.82[AFR][1000 genomes]
rs5745309	1.00[CEU][hapmap]
rs5745496	1.00[CEU][hapmap]
rs5745516	1.00[CEU][hapmap]
rs6692903	1.00[CEU][hapmap]
rs6696414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9943136	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9970840	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014072	chr1:76200531-76460726	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv535005	chr1:76200531-76460726	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3351964	chr1:76434093-76434356	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76430800-76434200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr1:76430800-76435000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:76430800-76435000	Weak transcription	HMEC	breast
4	chr1:76430800-76435000	Weak transcription	NHEK	skin
5	chr1:76430800-76435200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:76430800-76435400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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