Variant report

Variant	rs17098378
Chromosome Location	chr12:63228029-63228030
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:63227346..63229238-chr12:63238157..63241100,2	K562	blood:
2	chr12:63219854..63222833-chr12:63226244..63229699,3	MCF-7	breast:
3	chr12:63222256..63224492-chr12:63227398..63230235,3	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11174687	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174690	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174693	0.84[EUR][1000 genomes]
rs12299234	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12303102	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12310765	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12314531	0.92[ASN][1000 genomes]
rs12314598	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12314904	0.87[EUR][1000 genomes]
rs12314963	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12317932	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12321622	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34031846	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4762981	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4763031	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4763032	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4763033	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4763036	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4763039	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58144383	0.87[EUR][1000 genomes]
rs58419885	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60201508	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61032877	0.87[EUR][1000 genomes]
rs61921197	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61921199	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61922299	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61922302	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61922305	0.89[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61922306	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7311022	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7311342	1.00[CEU][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7316591	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7397471	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7397483	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74097105	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7955839	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7968796	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7977929	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401870	chr12:63215053-63228223	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63195800-63228600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr12:63207200-63228600	Weak transcription	A549	lung
3	chr12:63207200-63231200	Weak transcription	Pancreas	Pancrea
4	chr12:63211800-63228200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr12:63211800-63228200	Weak transcription	Aorta	Aorta
6	chr12:63212000-63228200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr12:63212400-63228200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr12:63212400-63228200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr12:63212400-63228400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr12:63212400-63228600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr12:63212400-63228800	Weak transcription	Brain Anterior Caudate	brain
12	chr12:63212400-63229000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr12:63212600-63234600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr12:63214000-63228400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr12:63218400-63234800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr12:63221200-63228200	Weak transcription	Ovary	ovary
17	chr12:63221400-63228800	Weak transcription	Fetal Kidney	kidney
18	chr12:63221600-63234200	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr12:63222200-63228200	Weak transcription	Left Ventricle	heart
20	chr12:63222200-63235200	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr12:63223800-63229200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr12:63225400-63237600	Weak transcription	Liver	Liver
23	chr12:63225600-63231800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr12:63225800-63230200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr12:63226000-63228200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr12:63226000-63234200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr12:63226000-63234600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr12:63226200-63228400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr12:63226200-63228800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr12:63226200-63240600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr12:63226400-63234000	Weak transcription	HepG2	liver
32	chr12:63226600-63229200	Enhancers	K562	blood
33	chr12:63226800-63228400	Weak transcription	Duodenum Mucosa	Duodenum
34	chr12:63227600-63231000	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr12:63227600-63237200	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr12:63227800-63228600	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr12:63227800-63228600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr12:63227800-63229200	Enhancers	Brain Substantia Nigra	brain
39	chr12:63228000-63228200	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr12:63228000-63228400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr12:63228000-63228400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr12:63228000-63228600	Enhancers	Brain Angular Gyrus	brain
43	chr12:63228000-63228600	Enhancers	Brain Inferior Temporal Lobe	brain
44	chr12:63228000-63228800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr12:63228000-63229000	Enhancers	Adipose Nuclei	Adipose
46	chr12:63228000-63229200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
47	chr12:63228000-63229200	Enhancers	HUES6 Cell Line	embryonic stem cell
48	chr12:63228000-63229400	Enhancers	Brain Hippocampus Middle	brain

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