Variant report

Variant	rs4762981
Chromosome Location	chr12:63226289-63226290
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:63221772..63223431-chr12:63224713..63226553,2	K562	blood:
2	chr12:63219854..63222833-chr12:63226244..63229699,3	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11174687	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174690	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174693	0.87[EUR][1000 genomes]
rs12299234	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12303102	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12310765	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12314531	0.86[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12314598	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12314904	0.90[EUR][1000 genomes]
rs12314963	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12317932	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12321622	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17098378	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34031846	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4763031	0.83[ASW][hapmap];1.00[CEU][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4763032	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4763033	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4763036	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4763039	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58144383	0.90[EUR][1000 genomes]
rs58419885	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60201508	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61032877	0.90[EUR][1000 genomes]
rs61921197	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61921199	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61922299	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61922302	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61922305	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61922306	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7311022	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7311342	1.00[CEU][hapmap];0.91[CHD][hapmap];0.90[GIH][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7316591	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7397471	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7397483	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74097105	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7955839	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7968796	1.00[CEU][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7977929	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401870	chr12:63215053-63228223	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63195800-63228600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr12:63207200-63228600	Weak transcription	A549	lung
3	chr12:63207200-63231200	Weak transcription	Pancreas	Pancrea
4	chr12:63211800-63228000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr12:63211800-63228200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr12:63211800-63228200	Weak transcription	Aorta	Aorta
7	chr12:63212000-63228200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr12:63212200-63227800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr12:63212400-63228200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr12:63212400-63228200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr12:63212400-63228400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr12:63212400-63228600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr12:63212400-63228800	Weak transcription	Brain Anterior Caudate	brain
14	chr12:63212400-63229000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr12:63212600-63227200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr12:63212600-63234600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr12:63214000-63228400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr12:63214800-63227800	Weak transcription	Brain Substantia Nigra	brain
19	chr12:63218400-63234800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr12:63221000-63226400	Strong transcription	HepG2	liver
21	chr12:63221200-63228200	Weak transcription	Ovary	ovary
22	chr12:63221400-63228800	Weak transcription	Fetal Kidney	kidney
23	chr12:63221600-63234200	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr12:63222200-63228200	Weak transcription	Left Ventricle	heart
25	chr12:63222200-63235200	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr12:63223600-63227400	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr12:63223800-63229200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr12:63224400-63228000	Weak transcription	Adipose Nuclei	Adipose
29	chr12:63225400-63237600	Weak transcription	Liver	Liver
30	chr12:63225600-63231800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr12:63225800-63226600	Enhancers	Fetal Intestine Large	intestine
32	chr12:63225800-63227800	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr12:63225800-63230200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr12:63226000-63226800	Enhancers	Duodenum Mucosa	Duodenum
35	chr12:63226000-63227800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr12:63226000-63228000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr12:63226000-63228000	Weak transcription	Brain Angular Gyrus	brain
38	chr12:63226000-63228000	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr12:63226000-63228200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr12:63226000-63234200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr12:63226000-63234600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr12:63226200-63226600	Weak transcription	Fetal Intestine Small	intestine
43	chr12:63226200-63228000	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr12:63226200-63228400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr12:63226200-63228800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr12:63226200-63240600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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