Variant report

Variant	rs17099317
Chromosome Location	chr14:33047071-33047072
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10141512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10141759	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10143802	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs10148474	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10149417	1.00[MEX][hapmap]
rs17099336	1.00[ASW][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6571539	1.00[MEX][hapmap]
rs8018498	1.00[YRI][hapmap]
rs872925	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33034400-33058200	Weak transcription	Psoas Muscle	Psoas
2	chr14:33035400-33062600	Weak transcription	Aorta	Aorta
3	chr14:33042400-33053400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr14:33042400-33058200	Weak transcription	Left Ventricle	heart
5	chr14:33045600-33047400	Enhancers	Brain Angular Gyrus	brain
6	chr14:33045600-33047600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr14:33045600-33048000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr14:33046000-33047400	Enhancers	Brain Hippocampus Middle	brain
9	chr14:33046000-33048400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr14:33046000-33063000	Weak transcription	Ovary	ovary
11	chr14:33046200-33047600	Weak transcription	Brain Germinal Matrix	brain
12	chr14:33046200-33053400	Weak transcription	Fetal Muscle Leg	muscle
13	chr14:33046200-33057000	Weak transcription	Brain Anterior Caudate	brain
14	chr14:33046200-33058200	Weak transcription	Right Ventricle	heart
15	chr14:33046400-33047400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr14:33046400-33047400	Weak transcription	Brain Substantia Nigra	brain
17	chr14:33046600-33061800	Weak transcription	Fetal Heart	heart
18	chr14:33047000-33047600	Strong transcription	HSMMtube	muscle
19	chr14:33047000-33048200	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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