Variant report

Variant	rs17099336
Chromosome Location	chr14:33057616-33057617
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10141512	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10141759	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10143802	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs10148474	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10149417	1.00[MEX][hapmap]
rs17099317	1.00[ASW][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6571539	1.00[MEX][hapmap]
rs8018498	1.00[YRI][hapmap]
rs872925	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33034400-33058200	Weak transcription	Psoas Muscle	Psoas
2	chr14:33035400-33062600	Weak transcription	Aorta	Aorta
3	chr14:33042400-33058200	Weak transcription	Left Ventricle	heart
4	chr14:33046000-33063000	Weak transcription	Ovary	ovary
5	chr14:33046200-33058200	Weak transcription	Right Ventricle	heart
6	chr14:33046600-33061800	Weak transcription	Fetal Heart	heart
7	chr14:33047600-33058200	Weak transcription	HSMMtube	muscle
8	chr14:33053600-33058200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr14:33054800-33059400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr14:33056600-33057800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
11	chr14:33056600-33057800	ZNF genes & repeats	Fetal Muscle Leg	muscle
12	chr14:33056600-33059200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr14:33057000-33060400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr14:33057000-33062000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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