Variant report

Variant	rs17100612
Chromosome Location	chr14:63462031-63462032
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10131255	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10133092	0.81[JPT][hapmap]
rs10149063	1.00[CEU][hapmap]
rs10150888	0.87[ASN][1000 genomes]
rs10450889	0.87[CHD][hapmap]
rs10450921	0.87[CHD][hapmap]
rs11158465	0.81[JPT][hapmap]
rs17100615	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17100617	1.00[CEU][hapmap]
rs17100635	0.83[CHB][hapmap]
rs1998203	1.00[CEU][hapmap]
rs28677162	0.88[ASN][1000 genomes]
rs28758782	0.83[EUR][1000 genomes]
rs7142940	0.81[JPT][hapmap]
rs9630387	1.00[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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