The 2.0 version of rSNPBase

Variant report

Variant rs17101101
Chromosome Location chr1:78439333-78439334
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:78405800-78442200 Strong transcription Fetal Thymus thymus
2 chr1:78406600-78440600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
3 chr1:78408400-78439600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
4 chr1:78415800-78440200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
5 chr1:78418400-78440800 Strong transcription Primary hematopoietic stem cells short term culture blood
6 chr1:78424600-78440600 Weak transcription Stomach Mucosa stomach
7 chr1:78426400-78439600 Weak transcription Spleen Spleen
8 chr1:78429600-78441800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
9 chr1:78430800-78440800 Weak transcription Psoas Muscle Psoas
10 chr1:78432200-78441400 Weak transcription Thymus Thymus
11 chr1:78432200-78442400 Weak transcription Esophagus oesophagus
12 chr1:78432400-78440600 Weak transcription Brain Hippocampus Middle brain
13 chr1:78432400-78440800 Weak transcription Brain Germinal Matrix brain
14 chr1:78432400-78441200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
15 chr1:78432400-78441200 Weak transcription Aorta Aorta
16 chr1:78432400-78442200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
17 chr1:78432400-78442400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
18 chr1:78432400-78442400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
19 chr1:78432600-78440000 Weak transcription Skeletal Muscle Male skeletal muscle
20 chr1:78432600-78443400 Weak transcription Placenta Amnion Placenta Amnion
21 chr1:78432800-78441400 Genic enhancers Primary T helper cells fromperipheralblood blood
22 chr1:78433000-78440600 Weak transcription Fetal Heart heart
23 chr1:78433000-78440600 Weak transcription Rectal Smooth Muscle rectum
24 chr1:78433200-78440600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
25 chr1:78433800-78440800 Weak transcription Brain Substantia Nigra brain
26 chr1:78433800-78441600 Weak transcription Colonic Mucosa Colon
27 chr1:78433800-78443600 Weak transcription ES-WA7 Cell Line embryonic stem cell
28 chr1:78434800-78439400 Weak transcription Fetal Muscle Trunk muscle
29 chr1:78434800-78440000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
30 chr1:78434800-78440200 Weak transcription NHLF lung
31 chr1:78434800-78440600 Weak transcription Brain Angular Gyrus brain
32 chr1:78434800-78440600 Weak transcription Brain Anterior Caudate brain
33 chr1:78434800-78440600 Weak transcription Fetal Brain Female brain
34 chr1:78434800-78440800 Weak transcription Fetal Lung lung
35 chr1:78434800-78441400 Weak transcription Cortex derived primary cultured neurospheres brain
36 chr1:78434800-78442200 Weak transcription H9 Cell Line embryonic stem cell
37 chr1:78435200-78440400 Weak transcription Stomach Smooth Muscle stomach
38 chr1:78435200-78440800 Weak transcription HSMMtube muscle
39 chr1:78435200-78441200 Weak transcription Fetal Kidney kidney
40 chr1:78435200-78441400 Weak transcription Primary hematopoietic stem cells blood
41 chr1:78435400-78440200 Weak transcription Adipose Nuclei Adipose
42 chr1:78435400-78440400 Weak transcription Skeletal Muscle Female skeletal muscle
43 chr1:78435400-78440800 Genic enhancers Primary T regulatory cells fromperipheralblood blood
44 chr1:78435400-78441200 Weak transcription Primary neutrophils fromperipheralblood blood
45 chr1:78435400-78441200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
46 chr1:78435600-78439600 Enhancers Primary T helper naive cells fromperipheralblood blood
47 chr1:78436000-78440200 Weak transcription Osteobl bone
48 chr1:78436200-78440400 Weak transcription Pancreatic Islets Pancreatic Islet
49 chr1:78436400-78440200 Strong transcription Fetal Intestine Small intestine
50 chr1:78436400-78440400 Weak transcription Muscle Satellite Cultured Cells --

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Last update: Aug 31, 2015