The 2.0 version of rSNPBase

Variant report

Variant rs9661687
Chromosome Location chr1:78387270-78387271
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:78356200-78408600 Weak transcription HMEC breast
2 chr1:78356400-78396000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
3 chr1:78367000-78407000 Weak transcription Fetal Adrenal Gland Adrenal Gland
4 chr1:78371600-78413000 Weak transcription Psoas Muscle Psoas
5 chr1:78372800-78418600 Weak transcription Pancreas Pancrea
6 chr1:78381400-78388000 Strong transcription HSMM muscle
7 chr1:78381400-78390600 Strong transcription Osteobl bone
8 chr1:78381600-78395200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
9 chr1:78381800-78387600 Strong transcription Skeletal Muscle Female skeletal muscle
10 chr1:78381800-78390600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
11 chr1:78381800-78390800 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
12 chr1:78382200-78390800 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
13 chr1:78382200-78407400 Weak transcription iPS-20b Cell Line embryonic stem cell
14 chr1:78382200-78408000 Weak transcription HUES64 Cell Line embryonic stem cell
15 chr1:78382400-78387800 Strong transcription Left Ventricle heart
16 chr1:78382400-78388000 Strong transcription HSMMtube muscle
17 chr1:78382400-78394000 Strong transcription Skeletal Muscle Male skeletal muscle
18 chr1:78382400-78405600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
19 chr1:78382800-78395800 Weak transcription NHDF-Ad bronchial
20 chr1:78383000-78400000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
21 chr1:78383200-78389800 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
22 chr1:78383600-78391000 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
23 chr1:78383600-78418600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr1:78383800-78387800 Strong transcription Fetal Muscle Trunk muscle
25 chr1:78383800-78389600 Strong transcription Stomach Smooth Muscle stomach
26 chr1:78383800-78404000 Strong transcription Breast Myoepithelial Primary Cells Breast
27 chr1:78384000-78388200 Strong transcription Aorta Aorta
28 chr1:78384000-78395400 Weak transcription Fetal Heart heart
29 chr1:78384200-78392200 Weak transcription Adipose Nuclei Adipose
30 chr1:78384400-78387600 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
31 chr1:78384400-78391800 Weak transcription Primary monocytes fromperipheralblood blood
32 chr1:78384400-78395400 Weak transcription Right Ventricle heart
33 chr1:78384600-78389800 Weak transcription NHLF lung
34 chr1:78384600-78391800 Weak transcription HUVEC blood vessel
35 chr1:78384600-78396400 Weak transcription Sigmoid Colon Sigmoid Colon
36 chr1:78384600-78406000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
37 chr1:78385000-78391800 Weak transcription Rectal Smooth Muscle rectum
38 chr1:78385200-78389800 Weak transcription Fetal Lung lung
39 chr1:78385200-78390800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
40 chr1:78385200-78400000 Weak transcription Fetal Intestine Large intestine
41 chr1:78385400-78387400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
42 chr1:78385600-78396400 Weak transcription Ovary ovary
43 chr1:78386200-78387600 Strong transcription Fetal Intestine Small intestine
44 chr1:78386200-78392400 Weak transcription Fetal Muscle Leg muscle
45 chr1:78386400-78387600 Strong transcription Duodenum Smooth Muscle Duodenum
46 chr1:78386600-78388000 Strong transcription Colon Smooth Muscle Colon
47 chr1:78386600-78388800 Weak transcription Muscle Satellite Cultured Cells --
48 chr1:78387000-78387600 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
49 chr1:78387000-78389000 Weak transcription NH-A brain
50 chr1:78387000-78389400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015