Variant report

Variant	rs17102199
Chromosome Location	chr14:65306634-65306635
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17102165	0.87[YRI][hapmap];0.84[AFR][1000 genomes]
rs17102205	0.84[YRI][hapmap];0.98[AFR][1000 genomes]
rs17102210	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs60607350	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61508277	0.91[AFR][1000 genomes]
rs7145280	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693408	chr14:65292670-65358576	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65296400-65308600	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr14:65298000-65306800	Weak transcription	Right Atrium	heart
3	chr14:65298400-65309800	Weak transcription	Right Ventricle	heart
4	chr14:65303600-65308200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr14:65304000-65307000	Weak transcription	Fetal Muscle Leg	muscle
6	chr14:65304800-65307200	Enhancers	K562	blood
7	chr14:65306000-65307800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr14:65306000-65307800	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr14:65306200-65307800	Weak transcription	Aorta	Aorta
10	chr14:65306400-65306800	Weak transcription	Psoas Muscle	Psoas
11	chr14:65306600-65308000	Enhancers	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links