Variant report

Variant	rs7145280
Chromosome Location	chr14:65333597-65333598
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17102199	0.82[YRI][hapmap]
rs17102236	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59779150	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60607350	0.81[AFR][1000 genomes]
rs7143861	0.90[AFR][1000 genomes]
rs7144358	0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7158502	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7158566	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74056084	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74056091	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693408	chr14:65292670-65358576	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv516238	chr14:65327288-65358576	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65328800-65334000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:65331600-65335800	Enhancers	Psoas Muscle	Psoas
3	chr14:65331800-65342400	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr14:65332000-65333600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr14:65332000-65334000	Strong transcription	K562	blood
6	chr14:65332200-65334200	Enhancers	Left Ventricle	heart
7	chr14:65332600-65334200	Enhancers	Right Atrium	heart
8	chr14:65332800-65335600	Enhancers	Right Ventricle	heart
9	chr14:65333000-65334000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr14:65333000-65334200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr14:65333000-65334200	Enhancers	Fetal Heart	heart
12	chr14:65333200-65336000	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr14:65333400-65333600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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