Variant report

Variant	rs7158502
Chromosome Location	chr14:65332097-65332098
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65331676..65335565-chr14:65336608..65339338,3	MCF-7	breast:
2	chr14:65324493..65326622-chr14:65332005..65334164,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17102236	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59779150	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7143861	0.87[AFR][1000 genomes]
rs7144358	0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7145280	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7158566	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74056084	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74056091	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693408	chr14:65292670-65358576	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv516238	chr14:65327288-65358576	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7158502	SSBP2	trans	lymphoblastoid	seeQTL

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65319400-65332600	Weak transcription	Right Atrium	heart
2	chr14:65325600-65332200	Weak transcription	Right Ventricle	heart
3	chr14:65327200-65332200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr14:65328800-65332200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr14:65328800-65332200	Weak transcription	Left Ventricle	heart
6	chr14:65328800-65332400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr14:65328800-65332400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr14:65328800-65334000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:65329000-65333000	Weak transcription	Fetal Heart	heart
10	chr14:65329200-65333000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr14:65329800-65332200	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr14:65331200-65332200	Weak transcription	Fetal Muscle Leg	muscle
13	chr14:65331600-65335800	Enhancers	Psoas Muscle	Psoas
14	chr14:65331800-65332800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr14:65331800-65333000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr14:65331800-65333200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr14:65331800-65342400	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr14:65332000-65332200	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr14:65332000-65332600	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr14:65332000-65333200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr14:65332000-65333600	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr14:65332000-65334000	Strong transcription	K562	blood

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