Variant report

Variant	rs17102795
Chromosome Location	chr14:35320200-35320201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:35305953..35310100-chr14:35318091..35320683,3	MCF-7	breast:
2	chr14:35317735..35320543-chr14:35328827..35330467,2	K562	blood:
3	chr14:35318271..35322990-chr14:35341179..35344684,6	MCF-7	breast:
4	chr14:35319782..35323023-chr14:35340158..35345901,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198604	Chromatin interaction
ENSG00000258738	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10136352	0.84[JPT][hapmap]
rs10150083	0.83[JPT][hapmap]
rs11847610	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs1200414	0.85[JPT][hapmap]
rs12431818	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12432567	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12433706	0.85[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs12435778	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12435859	0.85[AFR][1000 genomes]
rs12586459	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12586462	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12587021	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.94[ASN][1000 genomes]
rs12587251	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12587390	0.92[CHB][hapmap];0.81[YRI][hapmap];0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12587913	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12588318	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12590112	0.89[JPT][hapmap]
rs12590268	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1400745	0.94[JPT][hapmap]
rs17102726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17102768	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17102829	0.82[CEU][hapmap];0.90[JPT][hapmap]
rs17526787	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs17526884	0.91[YRI][hapmap];0.82[AFR][1000 genomes]
rs1959154	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2295468	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2383675	1.00[YRI][hapmap];0.87[ASN][1000 genomes]
rs2383676	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2383677	1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap]
rs34072166	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34245772	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3783315	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs3783316	0.84[JPT][hapmap]
rs5016735	0.87[ASN][1000 genomes]
rs55979964	0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs58268256	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58587072	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59678582	0.85[AFR][1000 genomes]
rs61981198	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61981200	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61981202	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61981204	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61981228	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61981232	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61981234	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61981236	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61981237	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61988010	0.90[ASN][1000 genomes]
rs61988011	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61988012	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61988013	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61988044	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61988045	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7142012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7148400	0.84[JPT][hapmap]
rs7150069	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[ASN][1000 genomes]
rs7153289	0.95[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs7155348	0.85[ASN][1000 genomes]
rs8005470	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs8005659	0.95[CEU][hapmap];0.85[CHB][hapmap];1.00[YRI][hapmap]
rs8010504	0.86[ASN][1000 genomes]
rs8010579	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3392700	chr14:34989406-35365530	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv1041857	chr14:35084889-35417180	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv1052162	chr14:35245349-35451187	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
4	nsv1053722	chr14:35257458-35465784	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
5	nsv1045939	chr14:35311074-35494703	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
6	nsv456203	chr14:35311272-35512335	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
7	nsv564200	chr14:35311272-35512335	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35269400-35322200	Weak transcription	Fetal Brain Female	brain
2	chr14:35269400-35341600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr14:35271800-35326400	Weak transcription	Esophagus	oesophagus
4	chr14:35272400-35333600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr14:35276200-35342400	Weak transcription	Pancreas	Pancrea
6	chr14:35276400-35329600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr14:35276400-35330000	Weak transcription	Colonic Mucosa	Colon
8	chr14:35277200-35322000	Weak transcription	Fetal Intestine Large	intestine
9	chr14:35282600-35323400	Weak transcription	Lung	lung
10	chr14:35292600-35322600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr14:35292600-35322800	Weak transcription	Thymus	Thymus
12	chr14:35292800-35320200	Weak transcription	Fetal Stomach	stomach
13	chr14:35295000-35322800	Weak transcription	Fetal Intestine Small	intestine
14	chr14:35295200-35327000	Weak transcription	Spleen	Spleen
15	chr14:35296200-35321600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr14:35303800-35321600	Weak transcription	Duodenum Mucosa	Duodenum
17	chr14:35304000-35326600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr14:35307000-35321000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr14:35307000-35333800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr14:35307400-35322000	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr14:35308600-35322000	Weak transcription	Liver	Liver
22	chr14:35308600-35322200	Weak transcription	Fetal Lung	lung
23	chr14:35312200-35336200	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr14:35312400-35326400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr14:35312600-35321600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr14:35312600-35325800	Weak transcription	Brain Hippocampus Middle	brain
27	chr14:35312600-35328600	Weak transcription	Fetal Kidney	kidney
28	chr14:35312600-35335200	Weak transcription	Right Ventricle	heart
29	chr14:35312800-35320200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr14:35312800-35320200	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr14:35312800-35320200	Weak transcription	Osteobl	bone
32	chr14:35312800-35320400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr14:35312800-35321600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr14:35312800-35321800	Weak transcription	NH-A	brain
35	chr14:35312800-35322000	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr14:35312800-35322000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr14:35312800-35322000	Weak transcription	HSMM	muscle
38	chr14:35312800-35322000	Weak transcription	HSMMtube	muscle
39	chr14:35312800-35322200	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr14:35312800-35322200	Weak transcription	Placenta	Placenta
41	chr14:35312800-35322400	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr14:35312800-35322400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr14:35312800-35323000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr14:35312800-35324400	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr14:35312800-35325200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr14:35312800-35326200	Weak transcription	Fetal Muscle Trunk	muscle
47	chr14:35312800-35328000	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr14:35312800-35328200	Weak transcription	Stomach Mucosa	stomach
49	chr14:35312800-35330600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr14:35312800-35331600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links