Variant report

Variant	rs17102829
Chromosome Location	chr14:35364648-35364649
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:35357879..35360041-chr14:35362909..35365006,2	K562	blood:
2	chr14:35363874..35366467-chr14:35451081..35453082,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100883	Chromatin interaction
ENSG00000258704	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10130069	0.80[CHB][hapmap]
rs10136352	0.90[JPT][hapmap]
rs10142667	0.85[CHB][hapmap]
rs10150083	0.94[JPT][hapmap]
rs1028448	0.85[CHB][hapmap]
rs1200414	0.91[JPT][hapmap]
rs12431818	0.83[CEU][hapmap];0.90[JPT][hapmap]
rs12433706	1.00[JPT][hapmap]
rs12434485	0.85[CHB][hapmap]
rs12435778	0.83[CEU][hapmap];0.90[JPT][hapmap]
rs12586459	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12587021	0.90[JPT][hapmap]
rs12590112	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13379337	0.89[JPT][hapmap]
rs13379372	0.85[CHB][hapmap]
rs17102726	0.83[CEU][hapmap];0.90[JPT][hapmap]
rs17102768	0.82[CEU][hapmap];0.90[JPT][hapmap]
rs17102795	0.82[CEU][hapmap];0.90[JPT][hapmap]
rs17526787	1.00[JPT][hapmap]
rs2254990	0.85[CHB][hapmap]
rs2295468	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2383677	1.00[JPT][hapmap]
rs28404080	0.84[CHB][hapmap]
rs34072166	0.83[CEU][hapmap];0.90[JPT][hapmap]
rs35713265	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3783315	0.90[JPT][hapmap]
rs3783316	0.90[JPT][hapmap]
rs3809448	0.85[CHB][hapmap]
rs4981258	0.80[CHB][hapmap]
rs4982234	0.81[CHB][hapmap]
rs61988045	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7148400	0.90[JPT][hapmap]
rs7150069	0.90[JPT][hapmap]
rs7153289	1.00[JPT][hapmap]
rs8005470	0.90[JPT][hapmap]
rs8005659	0.89[JPT][hapmap]
rs8010579	0.90[JPT][hapmap]
rs8019856	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3392700	chr14:34989406-35365530	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv1041857	chr14:35084889-35417180	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv1052162	chr14:35245349-35451187	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
4	nsv1053722	chr14:35257458-35465784	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
5	nsv1045939	chr14:35311074-35494703	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
6	nsv456203	chr14:35311272-35512335	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
7	nsv564200	chr14:35311272-35512335	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
8	esv20720	chr14:35362907-35374689	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35364000-35365600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr14:35364400-35364800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr14:35364400-35365400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr14:35364400-35365400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr14:35364600-35364800	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr14:35364600-35365600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr14:35364600-35365800	Enhancers	HUES6 Cell Line	embryonic stem cell

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