Variant report

Variant	rs7153289
Chromosome Location	chr14:35246534-35246535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:35239089..35240652-chr14:35244321..35246894,2	MCF-7	breast:
2	chr14:35244032..35246087-chr14:35246234..35248911,2	K562	blood:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10136352	0.90[JPT][hapmap]
rs10145299	0.92[ASN][1000 genomes]
rs10147130	1.00[ASN][1000 genomes]
rs10147134	1.00[ASN][1000 genomes]
rs10150083	0.93[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10150856	0.97[ASN][1000 genomes]
rs11847610	0.90[AFR][1000 genomes]
rs1200414	0.91[JPT][hapmap]
rs12431818	0.95[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12432567	0.82[EUR][1000 genomes]
rs12433706	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12435778	0.95[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12435859	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12586462	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12587021	0.88[CHB][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes]
rs12587251	0.95[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12587390	0.83[YRI][hapmap];0.84[AFR][1000 genomes]
rs12588318	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12590112	1.00[JPT][hapmap]
rs12590268	0.80[EUR][1000 genomes]
rs13379337	0.94[CHB][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs17102726	0.95[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17102768	0.95[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes]
rs17102795	0.95[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs17102829	1.00[JPT][hapmap]
rs17526787	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17526884	0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1959154	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2383675	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs2383676	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2383677	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[ASN][1000 genomes]
rs34072166	0.95[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes]
rs34245772	0.82[EUR][1000 genomes]
rs3783315	0.81[CHB][hapmap];0.90[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs3783316	0.90[JPT][hapmap]
rs55979964	0.84[AFR][1000 genomes]
rs56975955	1.00[ASN][1000 genomes]
rs58074336	0.97[ASN][1000 genomes]
rs58268256	0.90[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs58587072	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs59092668	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs59678582	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61981198	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61981200	0.81[AMR][1000 genomes]
rs61981201	0.98[ASN][1000 genomes]
rs61981202	0.85[EUR][1000 genomes]
rs61981204	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61981228	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61981232	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61981234	0.83[EUR][1000 genomes]
rs61981236	0.85[EUR][1000 genomes]
rs61981237	0.85[EUR][1000 genomes]
rs61988010	0.84[AFR][1000 genomes]
rs61988011	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs61988012	0.84[EUR][1000 genomes]
rs61988013	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6571686	0.97[ASN][1000 genomes]
rs7148400	0.90[JPT][hapmap]
rs7150069	0.82[CHB][hapmap];0.90[JPT][hapmap];0.84[YRI][hapmap]
rs8005470	0.82[CHB][hapmap];0.90[JPT][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes]
rs8005659	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8007644	0.97[ASN][1000 genomes]
rs8009900	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs8010579	1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs8013484	1.00[ASN][1000 genomes]
rs8016548	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8017454	0.96[ASN][1000 genomes]
rs8019856	0.84[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040980	chr14:34345018-35255592	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
2	nsv1048408	chr14:34958352-35255592	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	esv3392700	chr14:34989406-35365530	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1041857	chr14:35084889-35417180	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	nsv1051540	chr14:35200858-35278635	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv1052162	chr14:35245349-35451187	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35219400-35262000	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr14:35219400-35267000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:35219600-35254600	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr14:35221000-35253200	Strong transcription	Primary B cells from peripheral blood	blood
5	chr14:35221000-35255800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr14:35221200-35262000	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr14:35221400-35280800	Strong transcription	Primary T helper cells PMA-I stimulated	--
8	chr14:35221600-35255400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr14:35221600-35258800	Strong transcription	Dnd41	blood
10	chr14:35221600-35274600	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr14:35226000-35273400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr14:35226000-35274000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr14:35226200-35252600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr14:35226400-35267000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr14:35227600-35255600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr14:35227600-35267000	Weak transcription	Stomach Mucosa	stomach
17	chr14:35228000-35264600	Weak transcription	Brain Substantia Nigra	brain
18	chr14:35230000-35267000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr14:35230600-35250000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr14:35231200-35291800	Weak transcription	Fetal Brain Male	brain
21	chr14:35232000-35269800	Weak transcription	Fetal Heart	heart
22	chr14:35232600-35267200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr14:35232600-35293200	Weak transcription	Fetal Kidney	kidney
24	chr14:35233000-35251400	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr14:35234000-35248000	Weak transcription	Colonic Mucosa	Colon
26	chr14:35234000-35252800	Weak transcription	Colon Smooth Muscle	Colon
27	chr14:35234200-35267000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr14:35234200-35267000	Weak transcription	Pancreas	Pancrea
29	chr14:35234200-35271400	Weak transcription	Brain Angular Gyrus	brain
30	chr14:35234200-35271400	Weak transcription	Brain Anterior Caudate	brain
31	chr14:35234200-35274200	Weak transcription	Aorta	Aorta
32	chr14:35234200-35276000	Weak transcription	Brain Hippocampus Middle	brain
33	chr14:35234200-35311600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr14:35234400-35252600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr14:35234400-35267000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr14:35235600-35250800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr14:35235800-35250800	Weak transcription	Psoas Muscle	Psoas
38	chr14:35236600-35250600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr14:35237800-35255800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr14:35238200-35256000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr14:35239600-35250600	Strong transcription	GM12878-XiMat	blood
42	chr14:35239800-35249600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr14:35239800-35253200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr14:35239800-35253200	Strong transcription	Primary B cells from cord blood	blood
45	chr14:35239800-35253600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr14:35240000-35253200	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr14:35240000-35253600	Strong transcription	Primary T cells from cord blood	blood
48	chr14:35240000-35255800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr14:35240200-35246600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr14:35240200-35255600	Strong transcription	Primary T cells fromperipheralblood	blood

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