Variant report

Variant	rs13379337
Chromosome Location	chr14:35224430-35224431
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:35216580..35218836-chr14:35224214..35226003,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10136352	0.81[CHD][hapmap]
rs10145299	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10147130	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10147134	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10150083	0.86[CHB][hapmap];0.82[JPT][hapmap];0.97[ASN][1000 genomes]
rs10150856	0.96[ASN][1000 genomes]
rs12431818	0.82[CHB][hapmap]
rs12433706	0.94[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs12435778	0.82[CHB][hapmap]
rs12435859	0.97[ASN][1000 genomes]
rs12587021	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs12590112	0.94[CHD][hapmap];0.89[JPT][hapmap]
rs17102726	0.82[CHB][hapmap]
rs17102768	0.82[CHB][hapmap]
rs17102829	0.89[JPT][hapmap]
rs17526787	0.92[ASW][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];0.92[LWK][hapmap];0.84[YRI][hapmap];0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs17526884	0.97[ASN][1000 genomes]
rs2383677	0.93[CHB][hapmap];0.89[JPT][hapmap];0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs3783316	0.81[CHD][hapmap]
rs56975955	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs58074336	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59092668	0.98[ASN][1000 genomes]
rs59678582	0.97[ASN][1000 genomes]
rs61981201	0.97[ASN][1000 genomes]
rs6571686	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7148400	0.81[CHD][hapmap]
rs7153289	0.94[CHB][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs8005659	0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8007644	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8009900	0.99[ASN][1000 genomes]
rs8010579	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8013484	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs8016548	0.97[ASN][1000 genomes]
rs8017454	0.99[ASN][1000 genomes]
rs8019856	0.82[CHB][hapmap]
rs811340	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040980	chr14:34345018-35255592	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
2	nsv1048408	chr14:34958352-35255592	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	esv3392700	chr14:34989406-35365530	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1041857	chr14:35084889-35417180	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	nsv1040350	chr14:35196524-35245409	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv1051540	chr14:35200858-35278635	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35210600-35226800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:35211800-35227800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr14:35212200-35225800	Weak transcription	Lung	lung
4	chr14:35215000-35226000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr14:35215000-35226200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr14:35215200-35225600	Weak transcription	Spleen	Spleen
7	chr14:35216000-35225800	Weak transcription	Fetal Lung	lung
8	chr14:35216600-35230600	Weak transcription	K562	blood
9	chr14:35217800-35225800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr14:35218200-35226600	Weak transcription	Aorta	Aorta
11	chr14:35218200-35232400	Weak transcription	Psoas Muscle	Psoas
12	chr14:35219200-35230600	Weak transcription	Fetal Kidney	kidney
13	chr14:35219400-35262000	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr14:35219400-35267000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:35219600-35226000	Weak transcription	Colonic Mucosa	Colon
16	chr14:35219600-35229400	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr14:35219600-35254600	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr14:35219800-35229200	Weak transcription	NHLF	lung
19	chr14:35219800-35229800	Weak transcription	Small Intestine	intestine
20	chr14:35219800-35231600	Weak transcription	Right Ventricle	heart
21	chr14:35220200-35231000	Weak transcription	Hela-S3	cervix
22	chr14:35220400-35225800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr14:35220400-35225800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr14:35220400-35225800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr14:35220400-35225800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr14:35220400-35232200	Weak transcription	HSMMtube	muscle
27	chr14:35220600-35225000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr14:35220600-35226800	Weak transcription	Gastric	stomach
29	chr14:35220600-35227400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr14:35220800-35224600	Weak transcription	Fetal Intestine Large	intestine
31	chr14:35220800-35226000	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr14:35220800-35226000	Weak transcription	HMEC	breast
33	chr14:35220800-35226200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr14:35220800-35227400	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr14:35220800-35229200	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr14:35221000-35224800	Strong transcription	HSMM	muscle
37	chr14:35221000-35227400	Weak transcription	GM12878-XiMat	blood
38	chr14:35221000-35230400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr14:35221000-35234400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr14:35221000-35234600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr14:35221000-35253200	Strong transcription	Primary B cells from peripheral blood	blood
42	chr14:35221000-35255800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr14:35221200-35225000	Weak transcription	Fetal Muscle Trunk	muscle
44	chr14:35221200-35225800	Weak transcription	Fetal Muscle Leg	muscle
45	chr14:35221200-35229200	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr14:35221200-35229400	Weak transcription	Rectal Smooth Muscle	rectum
47	chr14:35221200-35229800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr14:35221200-35231000	Weak transcription	Colon Smooth Muscle	Colon
49	chr14:35221200-35233000	Weak transcription	Brain Anterior Caudate	brain
50	chr14:35221200-35262000	Strong transcription	Primary monocytes fromperipheralblood	blood

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