Variant report

Variant	rs8019856
Chromosome Location	chr14:35301896-35301897
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:35294810..35296955-chr14:35300530..35302325,3	K562	blood:
2	chr14:35294810..35298039-chr14:35300530..35302968,3	K562	blood:
3	chr14:35301729..35303996-chr14:35343988..35346723,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198604	Chromatin interaction

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10130170	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10131094	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10137511	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1013807	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10141595	0.81[ASN][1000 genomes]
rs10141974	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10147359	0.81[ASN][1000 genomes]
rs10150083	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10151928	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11156862	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11156863	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11156865	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11625876	0.81[ASN][1000 genomes]
rs11628471	0.81[EUR][1000 genomes]
rs11844788	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1200393	0.92[ASN][1000 genomes]
rs1200394	0.80[EUR][1000 genomes]
rs1200396	0.93[ASN][1000 genomes]
rs1200398	0.91[ASN][1000 genomes]
rs1200399	0.93[ASN][1000 genomes]
rs1200400	0.81[EUR][1000 genomes]
rs1200401	0.81[EUR][1000 genomes]
rs1200402	0.81[EUR][1000 genomes]
rs1200404	0.85[CHB][hapmap];0.87[ASN][1000 genomes]
rs1200405	0.93[ASN][1000 genomes]
rs1200406	0.80[ASN][1000 genomes]
rs1200408	0.92[ASN][1000 genomes]
rs1200410	0.88[ASN][1000 genomes]
rs1200411	0.82[ASN][1000 genomes]
rs1200412	0.81[EUR][1000 genomes]
rs1208461	0.94[ASN][1000 genomes]
rs12431611	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12432749	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12433706	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs12587390	0.89[CHB][hapmap]
rs12587814	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12590112	0.81[JPT][hapmap]
rs12590886	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13379337	0.82[CHB][hapmap]
rs1474940	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17102829	0.81[JPT][hapmap]
rs1712367	0.84[ASN][1000 genomes]
rs17526787	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs1953430	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1959155	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1959158	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1959159	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1973944	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2275145	0.87[ASN][1000 genomes]
rs2275146	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2275148	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2295467	0.82[ASN][1000 genomes]
rs2383677	0.87[CHB][hapmap];0.85[JPT][hapmap]
rs2383678	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2383680	0.87[ASN][1000 genomes]
rs2749983	0.91[ASN][1000 genomes]
rs2891295	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3783313	0.92[ASN][1000 genomes]
rs3783317	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4387519	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4981252	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4982209	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4982214	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4982221	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4982224	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4982226	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56742442	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56996825	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7140379	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7142040	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7143639	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7144793	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145412	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7146099	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7147682	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7148938	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149749	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7151547	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7153289	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs7157311	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7342501	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7342504	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7342544	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs799674	0.89[ASN][1000 genomes]
rs799675	0.84[ASN][1000 genomes]
rs8003944	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8004518	0.87[ASN][1000 genomes]
rs8005659	0.88[CHB][hapmap]
rs8006073	0.88[ASN][1000 genomes]
rs8010579	0.84[CHB][hapmap]
rs8011755	0.92[ASN][1000 genomes]
rs8019098	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3392700	chr14:34989406-35365530	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv1041857	chr14:35084889-35417180	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv1052162	chr14:35245349-35451187	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
4	nsv1053722	chr14:35257458-35465784	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35234200-35311600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr14:35269400-35322200	Weak transcription	Fetal Brain Female	brain
3	chr14:35269400-35341600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr14:35270400-35303400	Weak transcription	Stomach Mucosa	stomach
5	chr14:35271800-35326400	Weak transcription	Esophagus	oesophagus
6	chr14:35272400-35333600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr14:35274200-35311800	Weak transcription	HSMMtube	muscle
8	chr14:35274400-35303400	Weak transcription	Left Ventricle	heart
9	chr14:35274400-35312400	Weak transcription	Gastric	stomach
10	chr14:35274800-35312400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr14:35276200-35307200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr14:35276200-35342400	Weak transcription	Pancreas	Pancrea
13	chr14:35276400-35329600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr14:35276400-35330000	Weak transcription	Colonic Mucosa	Colon
15	chr14:35276600-35320000	Weak transcription	Fetal Muscle Leg	muscle
16	chr14:35277000-35307200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr14:35277200-35322000	Weak transcription	Fetal Intestine Large	intestine
18	chr14:35282600-35323400	Weak transcription	Lung	lung
19	chr14:35290600-35311800	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr14:35292400-35312200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr14:35292600-35312000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr14:35292600-35312400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr14:35292600-35322600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr14:35292600-35322800	Weak transcription	Thymus	Thymus
25	chr14:35292800-35303200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr14:35292800-35320200	Weak transcription	Fetal Stomach	stomach
27	chr14:35293800-35311800	Weak transcription	NH-A	brain
28	chr14:35294200-35310200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr14:35294400-35303400	Weak transcription	Small Intestine	intestine
30	chr14:35294400-35311400	Weak transcription	HMEC	breast
31	chr14:35294400-35311800	Weak transcription	NHLF	lung
32	chr14:35294400-35312200	Weak transcription	Hela-S3	cervix
33	chr14:35294600-35302800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr14:35294600-35303400	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr14:35295000-35310600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr14:35295000-35322800	Weak transcription	Fetal Intestine Small	intestine
37	chr14:35295200-35302800	Weak transcription	Adipose Nuclei	Adipose
38	chr14:35295200-35327000	Weak transcription	Spleen	Spleen
39	chr14:35295400-35303200	Weak transcription	GM12878-XiMat	blood
40	chr14:35295400-35306800	Weak transcription	HUVEC	blood vessel
41	chr14:35295400-35307000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr14:35295600-35303400	Weak transcription	Duodenum Mucosa	Duodenum
43	chr14:35296200-35321600	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr14:35296400-35302800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr14:35296400-35307200	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr14:35296400-35310800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr14:35296400-35311800	Weak transcription	HSMM	muscle
48	chr14:35296400-35312000	Weak transcription	K562	blood
49	chr14:35296400-35312400	Weak transcription	Fetal Thymus	thymus
50	chr14:35296600-35302600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links