Variant report

Variant	rs17104066
Chromosome Location	chr14:67633969-67633970
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:67632850..67634159-chr14:67752109..67753244,6	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1405856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1405857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103876	1.00[AFR][1000 genomes]
rs17103891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103910	1.00[AFR][1000 genomes]
rs17103917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103943	1.00[AFR][1000 genomes]
rs17103954	1.00[AMR][1000 genomes]
rs17103993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17104026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17104069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17104097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17104112	1.00[AMR][1000 genomes]
rs17104116	1.00[AMR][1000 genomes]
rs2026652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2026654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72715340	0.83[AFR][1000 genomes]
rs72715344	1.00[AFR][1000 genomes]
rs72715348	1.00[AFR][1000 genomes]
rs72715349	1.00[AFR][1000 genomes]
rs72715354	1.00[AFR][1000 genomes]
rs72715355	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902058	chr14:67310195-67760538	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv902059	chr14:67352226-67760538	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	esv2751285	chr14:67364747-67886781	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv902060	chr14:67417083-67760538	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	esv1841498	chr14:67434470-67634318	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1045518	chr14:67529049-67959582	Strong transcription Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
7	nsv832821	chr14:67590418-67828169	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	esv1838445	chr14:67600169-67634318	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:67584200-67637400	Weak transcription	Pancreas	Pancrea
2	chr14:67588000-67639400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr14:67588400-67639200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr14:67588600-67638400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr14:67590200-67637400	Weak transcription	Aorta	Aorta
6	chr14:67590200-67638000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr14:67590800-67637600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr14:67591400-67640000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr14:67600800-67647400	Weak transcription	Fetal Kidney	kidney
10	chr14:67610400-67634200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr14:67610600-67634600	Weak transcription	Ovary	ovary
12	chr14:67610800-67638400	Weak transcription	Left Ventricle	heart
13	chr14:67613000-67640200	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr14:67613200-67637400	Weak transcription	Adipose Nuclei	Adipose
15	chr14:67614400-67653200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr14:67615000-67634600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr14:67618400-67639200	Weak transcription	Brain Hippocampus Middle	brain
18	chr14:67618400-67658200	Weak transcription	Brain Angular Gyrus	brain
19	chr14:67625400-67638800	Weak transcription	GM12878-XiMat	blood
20	chr14:67626000-67638600	Weak transcription	Esophagus	oesophagus
21	chr14:67626400-67639800	Weak transcription	Primary T cells from cord blood	blood
22	chr14:67627000-67637400	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr14:67627000-67638400	Weak transcription	Fetal Stomach	stomach
24	chr14:67629800-67637400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr14:67630000-67645600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr14:67630400-67637200	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr14:67631600-67637600	Weak transcription	Fetal Intestine Small	intestine
28	chr14:67631600-67645800	Weak transcription	Psoas Muscle	Psoas
29	chr14:67631800-67638600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr14:67632400-67634600	Weak transcription	Liver	Liver
31	chr14:67632400-67640000	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr14:67632600-67634200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr14:67632600-67638800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr14:67632800-67636000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr14:67633200-67634200	Weak transcription	HSMM	muscle
36	chr14:67633200-67637200	Weak transcription	Right Ventricle	heart
37	chr14:67633200-67640000	Weak transcription	Brain Anterior Caudate	brain
38	chr14:67633200-67640000	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr14:67633200-67645400	Weak transcription	Rectal Smooth Muscle	rectum
40	chr14:67633400-67637400	Weak transcription	Gastric	stomach
41	chr14:67633400-67639800	Weak transcription	Dnd41	blood
42	chr14:67633600-67636000	Enhancers	A549	lung
43	chr14:67633600-67637200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr14:67633600-67637200	Weak transcription	Brain Cingulate Gyrus	brain
45	chr14:67633600-67637600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr14:67633600-67640000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr14:67633600-67640200	Weak transcription	Colon Smooth Muscle	Colon
48	chr14:67633800-67638200	Weak transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links