Variant report

Variant	rs17104116
Chromosome Location	chr14:67668563-67668564
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:67667112..67669927-chr14:67673384..67675184,2	MCF-7	breast:
2	chr14:67668079..67670109-chr14:67706345..67708659,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000072415	Chromatin interaction
ENSG00000172717	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1405856	1.00[AMR][1000 genomes]
rs1405857	1.00[AMR][1000 genomes]
rs17103786	1.00[AMR][1000 genomes]
rs17103794	1.00[AMR][1000 genomes]
rs17103813	1.00[AMR][1000 genomes]
rs17103815	1.00[AMR][1000 genomes]
rs17103816	1.00[AMR][1000 genomes]
rs17103822	1.00[AMR][1000 genomes]
rs17103826	1.00[AMR][1000 genomes]
rs17103833	1.00[AMR][1000 genomes]
rs17103847	1.00[AMR][1000 genomes]
rs17103891	1.00[AMR][1000 genomes]
rs17103917	1.00[AMR][1000 genomes]
rs17103933	1.00[AMR][1000 genomes]
rs17103940	1.00[AMR][1000 genomes]
rs17103954	1.00[AMR][1000 genomes]
rs17103993	1.00[AMR][1000 genomes]
rs17104026	1.00[AMR][1000 genomes]
rs17104066	1.00[AMR][1000 genomes]
rs17104069	1.00[AMR][1000 genomes]
rs17104097	1.00[AMR][1000 genomes]
rs17104112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2026652	1.00[AMR][1000 genomes]
rs2026654	1.00[AMR][1000 genomes]
rs7159020	1.00[YRI][hapmap]
rs877956	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902058	chr14:67310195-67760538	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv902059	chr14:67352226-67760538	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	esv2751285	chr14:67364747-67886781	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv902060	chr14:67417083-67760538	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1045518	chr14:67529049-67959582	Strong transcription Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv832821	chr14:67590418-67828169	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv1040257	chr14:67634585-67762806	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv983938	chr14:67656148-67670777	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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