Variant report

Variant	rs7159020
Chromosome Location	chr14:67858813-67858814
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:67857879..67859653-chr14:67862774..67864465,2	MCF-7	breast:
2	chr14:67856643..67859316-chr14:67877802..67879915,3	MCF-7	breast:
3	chr14:67850111..67855173-chr14:67855331..67859014,5	K562	blood:
4	chr14:67856289..67858952-chr14:67998920..68001441,2	K562	blood:

Variant related genes	Relation type
ENSG00000054690	Chromatin interaction
ENSG00000100558	Chromatin interaction
ENSG00000198133	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17104116	1.00[YRI][hapmap]
rs728979	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751285	chr14:67364747-67886781	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1045518	chr14:67529049-67959582	Strong transcription Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv456331	chr14:67732861-68103780	Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv564961	chr14:67732861-68103780	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	nsv470651	chr14:67732861-68113293	Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
6	nsv1054389	chr14:67804987-67922598	Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
7	nsv542121	chr14:67804987-67922598	Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:67831200-67864600	Strong transcription	Duodenum Mucosa	Duodenum
2	chr14:67835200-67863400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
3	chr14:67837600-67860800	Strong transcription	Sigmoid Colon	Sigmoid Colon
4	chr14:67839600-67862400	Strong transcription	Fetal Intestine Large	intestine
5	chr14:67844200-67859200	Weak transcription	Esophagus	oesophagus
6	chr14:67845000-67864800	Strong transcription	Hela-S3	cervix
7	chr14:67845600-67859400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr14:67846000-67876200	Weak transcription	Stomach Mucosa	stomach
9	chr14:67849200-67860600	Strong transcription	Fetal Stomach	stomach
10	chr14:67849600-67864400	Weak transcription	Gastric	stomach
11	chr14:67850000-67862200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr14:67850200-67878400	Weak transcription	Lung	lung
13	chr14:67850600-67859600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr14:67850600-67862400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr14:67851000-67863200	Weak transcription	Fetal Lung	lung
16	chr14:67852000-67860200	Weak transcription	NHLF	lung
17	chr14:67852200-67862400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr14:67852200-67863200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr14:67852400-67862400	Weak transcription	HSMMtube	muscle
20	chr14:67852600-67862000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr14:67852800-67859400	Weak transcription	Pancreas	Pancrea
22	chr14:67852800-67863200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr14:67852800-67865800	Strong transcription	HMEC	breast
24	chr14:67853200-67862600	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr14:67853800-67862800	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr14:67853800-67864600	Strong transcription	Fetal Intestine Small	intestine
27	chr14:67854000-67861600	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr14:67854000-67862400	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr14:67854000-67863000	Weak transcription	HSMM	muscle
30	chr14:67854200-67861800	Weak transcription	HUVEC	blood vessel
31	chr14:67854200-67862600	Weak transcription	NH-A	brain
32	chr14:67854200-67864400	Weak transcription	Left Ventricle	heart
33	chr14:67854200-67872000	Weak transcription	Small Intestine	intestine
34	chr14:67854400-67863200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr14:67854600-67862600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr14:67855000-67859200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr14:67855200-67859200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr14:67855200-67861800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr14:67855200-67863200	Weak transcription	A549	lung
40	chr14:67855200-67867400	Strong transcription	NHEK	skin
41	chr14:67855200-67875400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr14:67855800-67859200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr14:67856000-67861200	Enhancers	Fetal Thymus	thymus
44	chr14:67856600-67859000	Enhancers	Thymus	Thymus
45	chr14:67856600-67859200	Enhancers	Fetal Heart	heart
46	chr14:67857000-67862000	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr14:67857000-67862200	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr14:67857200-67860000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr14:67857200-67860000	Enhancers	Placenta	Placenta
50	chr14:67857400-67859200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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