Variant report

Variant	rs17104097
Chromosome Location	chr14:67652164-67652165
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RFX5	chr14:67652160-67652381	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:67634777..67636512-chr14:67650337..67652354,2	MCF-7	breast:
2	chr14:67605438..67607246-chr14:67649867..67652399,2	K562	blood:

Variant related genes	Relation type
FAM71D	TF binding region

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1405856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1405857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103876	1.00[AFR][1000 genomes]
rs17103891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103910	1.00[AFR][1000 genomes]
rs17103917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103943	1.00[AFR][1000 genomes]
rs17103954	1.00[AMR][1000 genomes]
rs17103993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17104026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17104066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17104069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17104112	1.00[AMR][1000 genomes]
rs17104116	1.00[AMR][1000 genomes]
rs2026652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2026654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72715340	0.83[AFR][1000 genomes]
rs72715344	1.00[AFR][1000 genomes]
rs72715348	1.00[AFR][1000 genomes]
rs72715349	1.00[AFR][1000 genomes]
rs72715354	1.00[AFR][1000 genomes]
rs72715355	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902058	chr14:67310195-67760538	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv902059	chr14:67352226-67760538	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	esv2751285	chr14:67364747-67886781	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv902060	chr14:67417083-67760538	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1045518	chr14:67529049-67959582	Strong transcription Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv832821	chr14:67590418-67828169	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv1040257	chr14:67634585-67762806	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:67614400-67653200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:67618400-67658200	Weak transcription	Brain Angular Gyrus	brain
3	chr14:67634600-67653200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr14:67635000-67652800	Weak transcription	NHEK	skin
5	chr14:67635000-67653200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr14:67639600-67658600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr14:67645400-67653000	Weak transcription	HSMM	muscle
8	chr14:67645800-67652800	Weak transcription	Primary T cells from cord blood	blood
9	chr14:67645800-67656400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr14:67645800-67658200	Weak transcription	Brain Anterior Caudate	brain
11	chr14:67646000-67653200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr14:67646000-67653400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr14:67646000-67653400	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr14:67646000-67655800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr14:67646200-67652600	Weak transcription	Brain Germinal Matrix	brain
16	chr14:67646200-67656200	Weak transcription	Psoas Muscle	Psoas
17	chr14:67646400-67652800	Weak transcription	Colon Smooth Muscle	Colon
18	chr14:67647400-67653000	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr14:67647600-67652800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr14:67647600-67653200	Weak transcription	HSMMtube	muscle
21	chr14:67647800-67652400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr14:67647800-67653200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr14:67647800-67653600	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr14:67647800-67658400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr14:67648200-67652600	Weak transcription	GM12878-XiMat	blood
26	chr14:67648200-67653000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr14:67648200-67653400	Weak transcription	Gastric	stomach
28	chr14:67648200-67653400	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr14:67648200-67653400	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr14:67648200-67653400	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr14:67648200-67654400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr14:67648200-67656000	Weak transcription	Aorta	Aorta
33	chr14:67648200-67656000	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr14:67648200-67656000	Weak transcription	Spleen	Spleen
35	chr14:67648200-67656200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr14:67648200-67658200	Weak transcription	Brain Hippocampus Middle	brain
37	chr14:67648200-67658200	Weak transcription	Brain Substantia Nigra	brain
38	chr14:67648200-67660400	Weak transcription	Ovary	ovary
39	chr14:67648400-67653200	Weak transcription	Duodenum Mucosa	Duodenum
40	chr14:67648400-67653200	Weak transcription	Left Ventricle	heart
41	chr14:67648400-67653400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr14:67648400-67653600	Weak transcription	Esophagus	oesophagus
43	chr14:67648400-67656000	Weak transcription	Fetal Stomach	stomach
44	chr14:67648400-67658000	Weak transcription	Brain Cingulate Gyrus	brain
45	chr14:67648400-67658000	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr14:67648400-67658400	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr14:67648400-67658800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr14:67648600-67653400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr14:67648600-67656000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr14:67648800-67653400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links