Variant report

Variant	rs17104084
Chromosome Location	chr5:145337046-145337047
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:145335614..145337168-chr5:145359129..145361981,2	MCF-7	breast:
2	chr5:145335319..145337448-chr5:145345584..145347652,2	MCF-7	breast:

rs_ID	r²[population]
rs10042794	1.00[AMR][1000 genomes]
rs10052821	1.00[AMR][1000 genomes]
rs12717944	1.00[AMR][1000 genomes]
rs57203937	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57882831	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73306030	1.00[AMR][1000 genomes]
rs73310182	1.00[AMR][1000 genomes]

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145319800-145366000	Weak transcription	Fetal Stomach	stomach
2	chr5:145322400-145337800	Weak transcription	Colonic Mucosa	Colon
3	chr5:145325800-145354600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:145327200-145340000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr5:145327200-145340000	Weak transcription	Hela-S3	cervix
6	chr5:145327400-145339800	Weak transcription	HepG2	liver
7	chr5:145327600-145340000	Weak transcription	NH-A	brain
8	chr5:145329000-145337800	Weak transcription	Pancreas	Pancrea
9	chr5:145330000-145338200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr5:145330000-145341400	Weak transcription	Gastric	stomach
11	chr5:145330000-145352000	Weak transcription	Aorta	Aorta
12	chr5:145330000-145353600	Weak transcription	Esophagus	oesophagus
13	chr5:145330000-145354600	Weak transcription	Right Ventricle	heart
14	chr5:145331400-145356600	Weak transcription	Psoas Muscle	Psoas
15	chr5:145332600-145339600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr5:145333200-145337800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr5:145333400-145354600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr5:145334400-145338200	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr5:145335000-145338600	Enhancers	Fetal Intestine Small	intestine
20	chr5:145335000-145339600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr5:145335400-145337800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr5:145335400-145337800	Weak transcription	Small Intestine	intestine
23	chr5:145336400-145337800	Strong transcription	NHEK	skin
24	chr5:145336400-145338600	Enhancers	Fetal Intestine Large	intestine
25	chr5:145336600-145337800	Weak transcription	Stomach Mucosa	stomach
26	chr5:145337000-145337600	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr5:145337000-145338200	Strong transcription	HMEC	breast
28	chr5:145337000-145338600	Enhancers	Duodenum Mucosa	Duodenum
29	chr5:145337000-145339600	Weak transcription	Liver	Liver
30	chr5:145337000-145340400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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