Variant report

Variant	rs17104395
Chromosome Location	chr5:145687714-145687715
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10515565	0.80[YRI][hapmap]
rs10515568	0.89[CEU][hapmap];0.96[EUR][1000 genomes]
rs1115080	0.91[AFR][1000 genomes]
rs11540216	0.80[EUR][1000 genomes]
rs11952903	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11959720	0.89[CEU][hapmap];0.84[YRI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12152830	0.84[AFR][1000 genomes]
rs13160605	0.91[AFR][1000 genomes]
rs1368345	0.91[AFR][1000 genomes]
rs17096590	0.87[AFR][1000 genomes]
rs17104247	0.80[EUR][1000 genomes]
rs17104250	0.80[EUR][1000 genomes]
rs17104260	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs17104264	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs17104266	0.80[EUR][1000 genomes]
rs17104268	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs17104276	0.80[EUR][1000 genomes]
rs17104293	0.86[EUR][1000 genomes]
rs17104318	0.89[CEU][hapmap];0.93[EUR][1000 genomes]
rs17104321	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17104322	0.89[CEU][hapmap];0.93[EUR][1000 genomes]
rs17104324	0.89[CEU][hapmap];0.93[EUR][1000 genomes]
rs17104331	0.86[CEU][hapmap];0.93[EUR][1000 genomes]
rs17104347	0.89[CEU][hapmap];0.96[EUR][1000 genomes]
rs17104362	0.89[CEU][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17104371	0.89[CEU][hapmap];0.96[EUR][1000 genomes]
rs1864948	0.86[AFR][1000 genomes]
rs2014462	0.89[AFR][1000 genomes]
rs2014473	0.88[AFR][1000 genomes]
rs2116749	0.84[YRI][hapmap]
rs2163754	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2895652	0.89[CEU][hapmap];0.93[EUR][1000 genomes]
rs3937558	0.89[AFR][1000 genomes]
rs4631229	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4705156	0.82[YRI][hapmap]
rs56413906	0.86[AFR][1000 genomes]
rs56864252	0.80[EUR][1000 genomes]
rs57466173	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57722184	0.90[EUR][1000 genomes]
rs58569901	0.80[EUR][1000 genomes]
rs58922378	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60892265	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61455974	0.80[EUR][1000 genomes]
rs6580413	0.88[AFR][1000 genomes]
rs66507348	0.80[EUR][1000 genomes]
rs66891285	0.80[EUR][1000 genomes]
rs67350755	0.80[EUR][1000 genomes]
rs67721586	0.80[EUR][1000 genomes]
rs67859456	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs67897591	0.80[EUR][1000 genomes]
rs68040240	0.95[EUR][1000 genomes]
rs6868728	0.89[AFR][1000 genomes]
rs6870249	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6870878	0.84[AFR][1000 genomes]
rs6871866	0.80[EUR][1000 genomes]
rs6882243	0.83[EUR][1000 genomes]
rs6893994	0.84[AFR][1000 genomes]
rs72806113	0.96[EUR][1000 genomes]
rs72806116	0.96[EUR][1000 genomes]
rs72806136	0.96[EUR][1000 genomes]
rs72806144	0.96[EUR][1000 genomes]
rs72806155	0.96[EUR][1000 genomes]
rs72806173	0.98[EUR][1000 genomes]
rs72806176	1.00[EUR][1000 genomes]
rs72820451	0.80[EUR][1000 genomes]
rs72822208	0.80[EUR][1000 genomes]
rs72822249	0.80[EUR][1000 genomes]
rs72822252	0.80[EUR][1000 genomes]
rs72822263	0.80[EUR][1000 genomes]
rs72822274	0.80[EUR][1000 genomes]
rs72824110	0.83[EUR][1000 genomes]
rs72824123	0.90[EUR][1000 genomes]
rs72824124	0.90[EUR][1000 genomes]
rs73315720	0.80[EUR][1000 genomes]
rs73317887	0.90[EUR][1000 genomes]
rs73317890	0.90[EUR][1000 genomes]
rs7722258	0.84[YRI][hapmap]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145685600-145688600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:145686400-145688600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:145687000-145687800	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr5:145687400-145687800	Enhancers	Adipose Nuclei	Adipose
5	chr5:145687400-145688200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links