Variant report

Variant	rs72806176
Chromosome Location	chr5:145684563-145684564
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:145680150..145681681-chr5:145682914..145684680,2	K562	blood:
2	chr5:145682961..145685958-chr5:145691254..145694928,4	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10515568	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11540216	0.80[EUR][1000 genomes]
rs11952903	0.96[EUR][1000 genomes]
rs11959720	0.96[EUR][1000 genomes]
rs17104247	0.80[EUR][1000 genomes]
rs17104250	0.80[EUR][1000 genomes]
rs17104260	0.80[EUR][1000 genomes]
rs17104264	0.80[EUR][1000 genomes]
rs17104266	0.80[EUR][1000 genomes]
rs17104268	0.80[EUR][1000 genomes]
rs17104276	0.80[EUR][1000 genomes]
rs17104293	0.86[EUR][1000 genomes]
rs17104318	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17104321	0.93[EUR][1000 genomes]
rs17104322	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17104324	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17104331	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17104347	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17104362	0.96[EUR][1000 genomes]
rs17104371	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17104395	1.00[EUR][1000 genomes]
rs2163754	0.93[EUR][1000 genomes]
rs2895652	0.93[EUR][1000 genomes]
rs4631229	0.96[EUR][1000 genomes]
rs56864252	0.80[EUR][1000 genomes]
rs57466173	0.96[EUR][1000 genomes]
rs57722184	0.90[EUR][1000 genomes]
rs58569901	0.80[EUR][1000 genomes]
rs58922378	0.96[EUR][1000 genomes]
rs60892265	0.91[EUR][1000 genomes]
rs61455974	0.80[EUR][1000 genomes]
rs66507348	0.80[EUR][1000 genomes]
rs66891285	0.80[EUR][1000 genomes]
rs67350755	0.80[EUR][1000 genomes]
rs67721586	0.80[EUR][1000 genomes]
rs67859456	0.93[EUR][1000 genomes]
rs67897591	0.80[EUR][1000 genomes]
rs68040240	0.95[EUR][1000 genomes]
rs6870249	0.96[EUR][1000 genomes]
rs6871866	0.80[EUR][1000 genomes]
rs6882243	0.83[EUR][1000 genomes]
rs72806113	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72806116	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72806136	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72806144	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72806155	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72806173	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72820451	0.80[EUR][1000 genomes]
rs72822208	0.80[EUR][1000 genomes]
rs72822249	0.80[EUR][1000 genomes]
rs72822252	0.80[EUR][1000 genomes]
rs72822263	0.80[EUR][1000 genomes]
rs72822274	0.80[EUR][1000 genomes]
rs72824110	0.83[EUR][1000 genomes]
rs72824123	0.90[EUR][1000 genomes]
rs72824124	0.90[EUR][1000 genomes]
rs73315720	0.80[EUR][1000 genomes]
rs73317887	0.90[EUR][1000 genomes]
rs73317890	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462478	chr5:145622472-145687295	Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv599937	chr5:145622472-145687295	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145684200-145687200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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