Variant report
Variant | rs58922378 |
---|---|
Chromosome Location | chr5:145679160-145679161 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr5:145669514..145673620-chr5:145676899..145679881,3 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10515568 | 1.00[EUR][1000 genomes] |
rs1115080 | 0.85[AFR][1000 genomes] |
rs11540216 | 0.83[EUR][1000 genomes] |
rs11952903 | 0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11959720 | 0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12152830 | 0.91[AFR][1000 genomes] |
rs13160605 | 0.85[AFR][1000 genomes] |
rs1368345 | 0.85[AFR][1000 genomes] |
rs17096590 | 0.81[AFR][1000 genomes] |
rs17104247 | 0.83[EUR][1000 genomes] |
rs17104250 | 0.83[EUR][1000 genomes] |
rs17104260 | 0.83[EUR][1000 genomes] |
rs17104264 | 0.83[EUR][1000 genomes] |
rs17104266 | 0.83[EUR][1000 genomes] |
rs17104268 | 0.83[EUR][1000 genomes] |
rs17104276 | 0.83[EUR][1000 genomes] |
rs17104293 | 0.90[EUR][1000 genomes] |
rs17104318 | 0.96[EUR][1000 genomes] |
rs17104321 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs17104322 | 0.96[EUR][1000 genomes] |
rs17104324 | 0.96[EUR][1000 genomes] |
rs17104331 | 0.96[EUR][1000 genomes] |
rs17104347 | 1.00[EUR][1000 genomes] |
rs17104362 | 0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs17104371 | 1.00[EUR][1000 genomes] |
rs17104395 | 0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs1864948 | 0.85[AFR][1000 genomes] |
rs2014462 | 0.89[AFR][1000 genomes] |
rs2014473 | 0.87[AFR][1000 genomes] |
rs2163754 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs2895652 | 0.96[EUR][1000 genomes] |
rs35947468 | 0.82[AFR][1000 genomes] |
rs3937558 | 0.89[AFR][1000 genomes] |
rs4631229 | 0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs56864252 | 0.83[EUR][1000 genomes] |
rs57466173 | 0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs57722184 | 0.93[EUR][1000 genomes] |
rs58569901 | 0.83[EUR][1000 genomes] |
rs60892265 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs61455974 | 0.83[EUR][1000 genomes] |
rs6580413 | 0.90[AFR][1000 genomes] |
rs66507348 | 0.83[EUR][1000 genomes] |
rs66891285 | 0.83[EUR][1000 genomes] |
rs67350755 | 0.83[EUR][1000 genomes] |
rs67721586 | 0.83[EUR][1000 genomes] |
rs67859456 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs67897591 | 0.83[EUR][1000 genomes] |
rs68040240 | 0.98[EUR][1000 genomes] |
rs6868728 | 0.89[AFR][1000 genomes] |
rs6870249 | 0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6871866 | 0.83[EUR][1000 genomes] |
rs6882243 | 0.86[EUR][1000 genomes] |
rs6884493 | 0.80[AFR][1000 genomes] |
rs72806113 | 1.00[EUR][1000 genomes] |
rs72806116 | 1.00[EUR][1000 genomes] |
rs72806136 | 1.00[EUR][1000 genomes] |
rs72806144 | 1.00[EUR][1000 genomes] |
rs72806155 | 1.00[EUR][1000 genomes] |
rs72806173 | 0.98[EUR][1000 genomes] |
rs72806176 | 0.96[EUR][1000 genomes] |
rs72820451 | 0.83[EUR][1000 genomes] |
rs72822208 | 0.83[EUR][1000 genomes] |
rs72822249 | 0.83[EUR][1000 genomes] |
rs72822252 | 0.83[EUR][1000 genomes] |
rs72822263 | 0.83[EUR][1000 genomes] |
rs72822274 | 0.83[EUR][1000 genomes] |
rs72824110 | 0.86[EUR][1000 genomes] |
rs72824123 | 0.93[EUR][1000 genomes] |
rs72824124 | 0.93[EUR][1000 genomes] |
rs73315720 | 0.83[EUR][1000 genomes] |
rs73317887 | 0.93[EUR][1000 genomes] |
rs73317890 | 0.93[EUR][1000 genomes] |
rs7724811 | 0.82[AFR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv428128 | chr5:145503978-145682880 | Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
2 | nsv462478 | chr5:145622472-145687295 | Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNAmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
3 | nsv599937 | chr5:145622472-145687295 | Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionChromatin interactive regionlncRNAmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:145669000-145681000 | Weak transcription | HSMM | muscle |