Variant report

Variant	rs17105134
Chromosome Location	chr14:68666374-68666375
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68664407..68668795-chr14:68676202..68680269,4	MCF-7	breast:
2	chr14:68657499..68660189-chr14:68663923..68666460,2	MCF-7	breast:
3	chr14:68665613..68668039-chr14:68669771..68673430,3	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17105131	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105140	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105191	0.92[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105200	0.91[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4427736	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4439690	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4584756	0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7146261	1.00[YRI][hapmap]
rs7152570	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7493976	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8003433	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8011148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68647000-68676600	Weak transcription	Primary B cells from cord blood	blood
2	chr14:68649400-68677000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:68651200-68675000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr14:68661400-68666400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr14:68662800-68667200	Enhancers	Fetal Intestine Small	intestine
6	chr14:68663000-68667200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr14:68663400-68666400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr14:68663400-68667000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr14:68663400-68667000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr14:68663600-68666600	Enhancers	Fetal Intestine Large	intestine
11	chr14:68663600-68667000	Enhancers	A549	lung
12	chr14:68663600-68667200	Enhancers	Liver	Liver
13	chr14:68664600-68667400	Enhancers	Colon Smooth Muscle	Colon
14	chr14:68664800-68667200	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr14:68665200-68667000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr14:68665400-68666400	Enhancers	Rectal Smooth Muscle	rectum
17	chr14:68665400-68666400	Enhancers	HepG2	liver
18	chr14:68665400-68667200	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr14:68665600-68666400	Enhancers	Brain Anterior Caudate	brain
20	chr14:68665600-68666400	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr14:68665600-68666400	Enhancers	Fetal Kidney	kidney
22	chr14:68665600-68666400	Enhancers	Stomach Smooth Muscle	stomach
23	chr14:68665600-68666600	Enhancers	Thymus	Thymus
24	chr14:68665600-68666800	Enhancers	Primary T cells from cord blood	blood
25	chr14:68665600-68666800	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr14:68665600-68666800	Enhancers	Small Intestine	intestine
27	chr14:68665600-68667000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr14:68665600-68667000	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr14:68665600-68667000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr14:68665600-68667000	Enhancers	Fetal Muscle Leg	muscle
31	chr14:68665600-68667000	Enhancers	Stomach Mucosa	stomach
32	chr14:68665600-68667200	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr14:68665600-68667200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr14:68665600-68667200	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr14:68665600-68667200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr14:68665600-68667200	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr14:68665600-68667600	Enhancers	Fetal Thymus	thymus
38	chr14:68665800-68666400	Enhancers	Osteobl	bone
39	chr14:68665800-68667000	Enhancers	Adipose Nuclei	Adipose
40	chr14:68665800-68667000	Enhancers	Fetal Lung	lung
41	chr14:68665800-68667000	Enhancers	Fetal Stomach	stomach
42	chr14:68666000-68666400	Enhancers	Fetal Brain Male	brain
43	chr14:68666000-68666600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr14:68666000-68666600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
45	chr14:68666000-68666600	Enhancers	Fetal Heart	heart
46	chr14:68666000-68667000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr14:68666000-68667200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr14:68666200-68666400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr14:68666200-68666400	Active TSS	Aorta	Aorta
50	chr14:68666200-68666400	Enhancers	Brain Germinal Matrix	brain

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