Variant report

Variant	rs17105200
Chromosome Location	chr14:68685681-68685682
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68680584..68683027-chr14:68684246..68686035,2	MCF-7	breast:
2	chr14:68683371..68686097-chr14:69141858..69143811,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs17105131	0.91[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105134	0.91[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105140	0.91[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105191	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105211	0.82[YRI][hapmap]
rs17105229	0.81[AFR][1000 genomes]
rs17105239	0.81[AFR][1000 genomes]
rs17105243	0.81[AFR][1000 genomes]
rs17105244	0.81[AFR][1000 genomes]
rs4427736	0.91[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4439690	0.91[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4584756	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4902565	1.00[JPT][hapmap]
rs7145443	0.81[AFR][1000 genomes]
rs7146261	0.91[YRI][hapmap]
rs7152570	0.88[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7156336	0.81[AFR][1000 genomes]
rs7160333	0.81[AFR][1000 genomes]
rs7161572	0.81[AFR][1000 genomes]
rs7493976	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8003433	0.91[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8011148	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8012217	0.81[AFR][1000 genomes]
rs8013323	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68675400-68690200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr14:68676200-68697600	Weak transcription	Ovary	ovary
3	chr14:68676800-68703000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr14:68678000-68686000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:68678000-68686200	Weak transcription	Aorta	Aorta
6	chr14:68678800-68697800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr14:68679200-68686400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr14:68681600-68698200	Weak transcription	Psoas Muscle	Psoas
9	chr14:68682400-68685800	Enhancers	Rectal Smooth Muscle	rectum
10	chr14:68682400-68686000	Weak transcription	Left Ventricle	heart
11	chr14:68682800-68690600	Weak transcription	Stomach Mucosa	stomach
12	chr14:68683800-68690200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr14:68683800-68690600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr14:68684000-68690400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr14:68684000-68690600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr14:68684200-68690000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr14:68684200-68690000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr14:68684400-68686200	Weak transcription	Lung	lung
19	chr14:68684400-68686200	Weak transcription	Pancreas	Pancrea
20	chr14:68684400-68690400	Weak transcription	Fetal Thymus	thymus
21	chr14:68685000-68705200	Weak transcription	K562	blood
22	chr14:68685200-68689600	Weak transcription	Fetal Stomach	stomach
23	chr14:68685200-68689800	Weak transcription	Colon Smooth Muscle	Colon
24	chr14:68685400-68690600	Weak transcription	Fetal Lung	lung

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