Variant report

Variant	rs17105211
Chromosome Location	chr14:68693052-68693053
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68688076..68702777-chr14:69257523..69263819,21	MCF-7	breast:
2	chr14:68677034..68679384-chr14:68692756..68694845,2	MCF-7	breast:
3	chr14:68691853..68693824-chr14:68716632..68719476,2	MCF-7	breast:
4	chr14:68659479..68661687-chr14:68690891..68693407,3	MCF-7	breast:
5	chr14:68691744..68694555-chr14:68697000..68699651,2	MCF-7	breast:
6	chr14:68687425..68689353-chr14:68692758..68694275,2	K562	blood:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17105168	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105187	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105191	0.83[YRI][hapmap]
rs17105200	0.82[YRI][hapmap]
rs17105203	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105241	1.00[AFR][1000 genomes]
rs4486809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4584756	0.83[YRI][hapmap]
rs7146865	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68676200-68697600	Weak transcription	Ovary	ovary
2	chr14:68676800-68703000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr14:68678800-68697800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:68681600-68698200	Weak transcription	Psoas Muscle	Psoas
5	chr14:68685000-68705200	Weak transcription	K562	blood
6	chr14:68690200-68696000	Weak transcription	Fetal Stomach	stomach
7	chr14:68690600-68696600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:68690800-68712800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr14:68691000-68696200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr14:68691000-68696400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr14:68691000-68696600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr14:68691000-68696600	Weak transcription	Stomach Mucosa	stomach
13	chr14:68691000-68697000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr14:68691000-68697000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr14:68691000-68697000	Weak transcription	Colon Smooth Muscle	Colon
16	chr14:68691000-68697200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr14:68691000-68705800	Weak transcription	Primary T cells from cord blood	blood
18	chr14:68691200-68696200	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr14:68691200-68696800	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr14:68692800-68697000	Weak transcription	Fetal Lung	lung
21	chr14:68693000-68705800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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